Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01250 ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGTGACCAACACTACATCTCCGCCGCCGGTTACCCCCAGTGCACCGCCGCCATCGACACCTTCGCAGCCGCCACCGGCCGCTACACCTCCACCAACTACCACTCCGCCTGCCGCTGCAACGCCGCCCGCTCCTTCTCAGCCTCCGCCGACATCCGCCCCACCTCCGGCCACTCCCTCTTCGCCACCACCGGTTACTCCCCAGCCCACACCGCCCACTGGCTCTCCCTCGCGGCCGTCTCCCTCTCCTCCGCCGTCTCCGCCATCTACTCCCTCAACTTCTCCACCTCCTCCGTCTCCTCCGGGAGGCCACAGTCCGCCTCCTCCGACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCATCAAGGCCGTCGTCATCGCCGCCTTCCTCCTCCTCCTCCTCGCCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTCGTAATTGTTCTTTTGCTAAGTATATTGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGATGAAGAAGGATTCTATCCACACCCTCCGTCAGGACCAAAAGTGGACCCTTATGGTGGCCAGCAGCAATGGCAGCACAATGCTCCTCTGCCACCCGATCCGTTAATCGGGATAGCGCCTAAGCCATCTCCTCCTCCTGCCGTTGCATCCCGACCCCTCCACTCGCCGACCGGGAGTCGGCCCCCGCCTCCACAGCTTTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCTGGCTCTGAAAATCCACTCCCTCCGCCCCCACCACCTCCTATGGCCTTTGGTTTCTCAAAAAGTACTTTCACTTATGAAGAATTGTCAATGGCGACCGATGGATTTTCAGATGCGAATCTCCTCGGACAAGGCGGATTTGGATATGTCCATAGAGGAGTTCTTCCTAATGGCAAGGAAGTTGCAGTCAAGCAGCTGAAAGTCGGGAGTGGGCAAGGCGAACGAGAATTTCAGGCCGAAGTCGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCGGCAAAGGGATTAGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAATATTCTGTTGGATTTCAAGTTTGAAGCAATGGTTGCTGATTTCGGACTTGCAAAGTTTACTTCTGATGTTAATACCCACGTATCGACTCGAGTGATGGGTACTTTCGGCTATCTTGCACCAGAGTATGCCTCGAGTGGCAAACTTACTGAGAAGTCGGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCGGTCGATACGAGTAATACTTTCATGGAAGATAGTCTCGTAGACTGGGCCAGGCCGTTATTGAACCGAGCTCTAGAAGATGGAAACTTCGATGCTTTGATCGATCCGAGTATTCAGAACAACTACAACCACACTGAGATGGCTCGTATGATTGAATGTGCTGCTGCCTGCGTGCGACATTCTGCAAGGCGTCGACCTCGAATGAGCCAGGTAGTACGAACGCTCGAAGGAGACGCATCACTATCGGACCTCAACGAAGGAATCAAACCCGGGCAGAGCTCAATGTATAGTTCTCATGGAAGCTCAGACTATGACACCCATCAGTACAACGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCTCGGAGTATGGAGCGAGTAGCGAGTACAGCCGACCGACAAGCGAGTACGGGCTGTATCCATCGGGGACGAGCAGCGAAGGGCAAACCACTAGAGAAATGGAGATGAGAACAGTGAAGAAAGAGAGTGGAGGCTTCAGTGGAAACAATTGA 2013 52.66 MSTPTPAPTSPPVTNTTSPPPVTPSAPPPSTPSQPPPAATPPPTTTPPAAATPPAPSQPPPTSAPPPATPSSPPPVTPQPTPPTGSPSRPSPSPPPSPPSTPSTSPPPPSPPGGHSPPPPTSHTPSTPSRSPPPPSRPSSSPPSSSSSSPNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPSGPKVDPYGGQQQWQHNAPLPPDPLIGIAPKPSPPPAVASRPLHSPTGSRPPPPQLYMSSSGGSGSMYSGSENPLPPPPPPPMAFGFSKSTFTYEELSMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPSIQNNYNHTEMARMIECAAACVRHSARRRPRMSQVVRTLEGDASLSDLNEGIKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSSEYGASSEYSRPTSEYGLYPSGTSSEGQTTREMEMRTVKKESGGFSGNN 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9778780 9782543 + CmaCh12G012500.1 Cma12g01250 305740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01250 670 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 56 656 - -
Cma12g01250 670 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 56 656 - -
Cma12g01250 670 Gene3D Transferase(Phosphotransferase) domain 1 376 585 - -
Cma12g01250 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Cma12g01250 670 MobiDBLite consensus disorder prediction 184 283 - -
Cma12g01250 670 SMART serkin_6 300 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01250 670 MobiDBLite consensus disorder prediction 584 602 - -
Cma12g01250 670 Gene3D Phosphorylase Kinase; domain 1 279 375 - -
Cma12g01250 670 MobiDBLite consensus disorder prediction 581 604 - -
Cma12g01250 670 MobiDBLite consensus disorder prediction 250 267 - -
Cma12g01250 670 PRINTS Proline rich extensin signature 4 20 - -
Cma12g01250 670 PRINTS Proline rich extensin signature 24 41 - -
Cma12g01250 670 PRINTS Proline rich extensin signature 49 74 - -
Cma12g01250 670 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Cma12g01250 670 Pfam Protein tyrosine and serine/threonine kinase 305 573 IPR001245 GO:0004672|GO:0006468
Cma12g01250 670 MobiDBLite consensus disorder prediction 1 151 - -
Cma12g01250 670 MobiDBLite consensus disorder prediction 1 141 - -
Cma12g01250 670 MobiDBLite consensus disorder prediction 622 670 - -
Cma12g01250 670 MobiDBLite consensus disorder prediction 624 652 - -
Cma12g01250 670 SUPERFAMILY Protein kinase-like (PK-like) 275 573 IPR011009 -
Cma12g01250 670 ProSiteProfiles Protein kinase domain profile. 300 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01250 670 MobiDBLite consensus disorder prediction 219 249 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g00611 Cma12g01250 CCT
Cma10g00621 Cma12g01250 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00681 Cma-Chr11:3301309 Cma12g01250 Cma-Chr12:9778780 2.62E-90 dispersed
Cma12g01250 Cma-Chr12:9778780 Cma04g01733 Cma-Chr4:8715449 1.46E-171 dispersed
Cma14g01290 Cma-Chr14:10198619 Cma12g01250 Cma-Chr12:9778780 1.09E-60 dispersed
Cma20g00855 Cma-Chr20:4104105 Cma12g01250 Cma-Chr12:9778780 3.44E-162 dispersed
Cma04g00778 Cma-Chr4:3963160 Cma12g01250 Cma-Chr12:9778780 1.42E-172 transposed
Cma10g00621 Cma-Chr10:2859964 Cma12g01250 Cma-Chr12:9778780 0 wgd
Cma11g00611 Cma-Chr11:2924930 Cma12g01250 Cma-Chr12:9778780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68983 PF07714 PK_Tyr_Ser-Thr 1.70E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01250 - - bhj:120079307 895.575