Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01250 | ATGTCAACCCCTACTCCGGCGCCGACGTCTCCGCCGGTGACCAACACTACATCTCCGCCGCCGGTTACCCCCAGTGCACCGCCGCCATCGACACCTTCGCAGCCGCCACCGGCCGCTACACCTCCACCAACTACCACTCCGCCTGCCGCTGCAACGCCGCCCGCTCCTTCTCAGCCTCCGCCGACATCCGCCCCACCTCCGGCCACTCCCTCTTCGCCACCACCGGTTACTCCCCAGCCCACACCGCCCACTGGCTCTCCCTCGCGGCCGTCTCCCTCTCCTCCGCCGTCTCCGCCATCTACTCCCTCAACTTCTCCACCTCCTCCGTCTCCTCCGGGAGGCCACAGTCCGCCTCCTCCGACTTCTCATACGCCGTCCACTCCGTCAAGAAGTCCTCCGCCTCCATCAAGGCCGTCGTCATCGCCGCCTTCCTCCTCCTCCTCCTCGCCTAATATTTCAACTGGACTTGTCGTCGGAATCGCAATTGGTGGAGTCGTAATTGTTCTTTTGCTAAGTATATTGTGTCTTTGTTGCACGAAGAAGAGGAGAAGACGACGCGATGAAGAAGGATTCTATCCACACCCTCCGTCAGGACCAAAAGTGGACCCTTATGGTGGCCAGCAGCAATGGCAGCACAATGCTCCTCTGCCACCCGATCCGTTAATCGGGATAGCGCCTAAGCCATCTCCTCCTCCTGCCGTTGCATCCCGACCCCTCCACTCGCCGACCGGGAGTCGGCCCCCGCCTCCACAGCTTTATATGAGTAGCAGTGGAGGTTCAGGCTCTATGTATTCTGGCTCTGAAAATCCACTCCCTCCGCCCCCACCACCTCCTATGGCCTTTGGTTTCTCAAAAAGTACTTTCACTTATGAAGAATTGTCAATGGCGACCGATGGATTTTCAGATGCGAATCTCCTCGGACAAGGCGGATTTGGATATGTCCATAGAGGAGTTCTTCCTAATGGCAAGGAAGTTGCAGTCAAGCAGCTGAAAGTCGGGAGTGGGCAAGGCGAACGAGAATTTCAGGCCGAAGTCGATATTATCAGCCGAGTTCATCATAAACATCTTGTTTCTTTGGTTGGATATTGCATAACTGGGTCTCAAAGATTGCTTGTTTATGAGTTTGTTCCAAACAACACTTTGGAGTTTCATTTACATGGTAAAGGGCGACCGACCATGGATTGGCAGACGAGACTTAGAATCGCTTTAGGATCGGCAAAGGGATTAGCTTATCTTCATGAGGATTGTCACCCGAAAATCATTCATCGCGATATTAAAGCTGCTAATATTCTGTTGGATTTCAAGTTTGAAGCAATGGTTGCTGATTTCGGACTTGCAAAGTTTACTTCTGATGTTAATACCCACGTATCGACTCGAGTGATGGGTACTTTCGGCTATCTTGCACCAGAGTATGCCTCGAGTGGCAAACTTACTGAGAAGTCGGATGTTTTCTCCTTTGGGGTTATGCTTTTGGAGTTGATCACTGGTCGTCGACCGGTCGATACGAGTAATACTTTCATGGAAGATAGTCTCGTAGACTGGGCCAGGCCGTTATTGAACCGAGCTCTAGAAGATGGAAACTTCGATGCTTTGATCGATCCGAGTATTCAGAACAACTACAACCACACTGAGATGGCTCGTATGATTGAATGTGCTGCTGCCTGCGTGCGACATTCTGCAAGGCGTCGACCTCGAATGAGCCAGGTAGTACGAACGCTCGAAGGAGACGCATCACTATCGGACCTCAACGAAGGAATCAAACCCGGGCAGAGCTCAATGTATAGTTCTCATGGAAGCTCAGACTATGACACCCATCAGTACAACGAGGACTTGAGGAAGTTCAGGAAGATGGCACTGGGAAGCTCGGAGTATGGAGCGAGTAGCGAGTACAGCCGACCGACAAGCGAGTACGGGCTGTATCCATCGGGGACGAGCAGCGAAGGGCAAACCACTAGAGAAATGGAGATGAGAACAGTGAAGAAAGAGAGTGGAGGCTTCAGTGGAAACAATTGA | 2013 | 52.66 | MSTPTPAPTSPPVTNTTSPPPVTPSAPPPSTPSQPPPAATPPPTTTPPAAATPPAPSQPPPTSAPPPATPSSPPPVTPQPTPPTGSPSRPSPSPPPSPPSTPSTSPPPPSPPGGHSPPPPTSHTPSTPSRSPPPPSRPSSSPPSSSSSSPNISTGLVVGIAIGGVVIVLLLSILCLCCTKKRRRRRDEEGFYPHPPSGPKVDPYGGQQQWQHNAPLPPDPLIGIAPKPSPPPAVASRPLHSPTGSRPPPPQLYMSSSGGSGSMYSGSENPLPPPPPPPMAFGFSKSTFTYEELSMATDGFSDANLLGQGGFGYVHRGVLPNGKEVAVKQLKVGSGQGEREFQAEVDIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGKGRPTMDWQTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAMVADFGLAKFTSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTSNTFMEDSLVDWARPLLNRALEDGNFDALIDPSIQNNYNHTEMARMIECAAACVRHSARRRPRMSQVVRTLEGDASLSDLNEGIKPGQSSMYSSHGSSDYDTHQYNEDLRKFRKMALGSSEYGASSEYSRPTSEYGLYPSGTSSEGQTTREMEMRTVKKESGGFSGNN | 670 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9778780 | 9782543 | + | CmaCh12G012500.1 | Cma12g01250 | 305740 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01250 | 670 | PANTHER | SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED | 56 | 656 | - | - | |
Cma12g01250 | 670 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 56 | 656 | - | - | |
Cma12g01250 | 670 | Gene3D | Transferase(Phosphotransferase) domain 1 | 376 | 585 | - | - | |
Cma12g01250 | 670 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 420 | 432 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 184 | 283 | - | - | |
Cma12g01250 | 670 | SMART | serkin_6 | 300 | 536 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 584 | 602 | - | - | |
Cma12g01250 | 670 | Gene3D | Phosphorylase Kinase; domain 1 | 279 | 375 | - | - | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 581 | 604 | - | - | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 250 | 267 | - | - | |
Cma12g01250 | 670 | PRINTS | Proline rich extensin signature | 4 | 20 | - | - | |
Cma12g01250 | 670 | PRINTS | Proline rich extensin signature | 24 | 41 | - | - | |
Cma12g01250 | 670 | PRINTS | Proline rich extensin signature | 49 | 74 | - | - | |
Cma12g01250 | 670 | ProSitePatterns | Protein kinases ATP-binding region signature. | 306 | 328 | IPR017441 | GO:0005524 | |
Cma12g01250 | 670 | Pfam | Protein tyrosine and serine/threonine kinase | 305 | 573 | IPR001245 | GO:0004672|GO:0006468 | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 1 | 151 | - | - | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 1 | 141 | - | - | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 622 | 670 | - | - | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 624 | 652 | - | - | |
Cma12g01250 | 670 | SUPERFAMILY | Protein kinase-like (PK-like) | 275 | 573 | IPR011009 | - | |
Cma12g01250 | 670 | ProSiteProfiles | Protein kinase domain profile. | 300 | 579 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01250 | 670 | MobiDBLite | consensus disorder prediction | 219 | 249 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g00611 | Cma12g01250 | CCT | |
Cma10g00621 | Cma12g01250 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00681 | Cma-Chr11:3301309 | Cma12g01250 | Cma-Chr12:9778780 | 2.62E-90 | dispersed | |
Cma12g01250 | Cma-Chr12:9778780 | Cma04g01733 | Cma-Chr4:8715449 | 1.46E-171 | dispersed | |
Cma14g01290 | Cma-Chr14:10198619 | Cma12g01250 | Cma-Chr12:9778780 | 1.09E-60 | dispersed | |
Cma20g00855 | Cma-Chr20:4104105 | Cma12g01250 | Cma-Chr12:9778780 | 3.44E-162 | dispersed | |
Cma04g00778 | Cma-Chr4:3963160 | Cma12g01250 | Cma-Chr12:9778780 | 1.42E-172 | transposed | |
Cma10g00621 | Cma-Chr10:2859964 | Cma12g01250 | Cma-Chr12:9778780 | 0 | wgd | |
Cma11g00611 | Cma-Chr11:2924930 | Cma12g01250 | Cma-Chr12:9778780 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68983 | PF07714 | PK_Tyr_Ser-Thr | 1.70E-45 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01250 | - | - | bhj:120079307 | 895.575 |