Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01257 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGACTCCATTAGTATCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGAACGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGAATCCCCTATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGATCGACGGCCAAGGACCTATCAACTCATAGACCAGTAGCATTTCAACAGGCAAATCATGCCAAAGCCACTGCTCCTCCGTTACCATCCTTCCCCATTGCTGGTGTTGGAAGCCCGTCATTGTTGGGTCCCTCAAAGTTTACCTATAGGTCTTTAATGGCAGACATCATTCAATCACAAAATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTATCAAGTGAAGCTGCCAAAACATTTCAAGATCAAACAAATGCTACAGAAAAGCAAGCTGATTGTCAGATAGAAACTTCTGTTGCATCATCCAATCAAGATAGGTTGCAGAAAAAAGATGTATCCAACGAGAAAGCTGCAGCCGATGATCGTTCAAGCGCAAACCAGACCAACAAAACCACCACTGATGATTCCAATTCAGATGGTGGAGATGTGTCAAAGGGCGCAACCATGTCTCCCGGAACATTGGCTTTGATGTGCGACGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAATGGGTCCTGGCTGCAGCACTTCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCCGAGCAGGAGAGGATCTGTTCCACTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACTCACTCAACCATGGCACTACAAATTCTAGAACCGAAACACAAACTCATTTGGAACAACTCAACAATAAAGTTACAAAATCTTCGATCCCACCATCGGGGAAGACCACGCAGACGGTAACCGCTACAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAGGGCCGTTTCTCGGATATCATCTCGCTTGCACTCTCTTGCTTCAAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTTATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGACCATTGAATCTCGAGGATGGGGCTTAGTTCCTCAGGGATCTGATCATAATTCGGGTCAAGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGAAGGAAGGAAGGCCTACAAAAGAATAGGTTTACTCATAAAATCAATGTCTTCTTGTTGTTTCCAACAACTCTCTTCATTGGCCAATGATCCGAAATTAGGATTGTCTTTGTCAACATCCCAACCCATGAAATCTGAGAGTGTCTTTGAAGCTTCAGAGTCATTAGATCTCGATTTGTCTTCTTCATCCACAGGCAGATTCTTCAAGGACTGCTTGATCGACAATTCTCGAGCAATG 2286 45.58 MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQTPLVSQNLQQAQPKPQPQMVAASNAPLAPHSSVRTVKSESPMSRARPAVEAKDSTPKKQKQCNCKHSRYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSTHRPVAFQQANHAKATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQNLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQIETSVASSNQDRLQKKDVSNEKAAADDRSSANQTNKTTTDDSNSDGGDVSKGATMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERICSTLARSEVGNQEHSLNHGTTNSRTETQTHLEQLNNKVTKSSIPPSGKTTQTVTATVMTLSNDQRQKVLPLSSSLRRSSMASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIASARLISSLTIESRGWGLVPQGSDHNSGQVFQCLYDSFGLQEGRKAYKRIGLLIKSMSSCCFQQLSSLANDPKLGLSLSTSQPMKSESVFEASESLDLDLSSSSTGRFFKDCLIDNSRAM 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9804970 9816279 - CmaCh12G012570.1 Cma12g01257 305747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01257 762 MobiDBLite consensus disorder prediction 387 438 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 409 434 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 17 32 - -
Cma12g01257 762 SMART CXC_2 117 153 IPR033467 -
Cma12g01257 762 SMART CXC_2 198 239 IPR033467 -
Cma12g01257 762 PANTHER TESMIN/TSO1-RELATED 68 492 IPR028307 -
Cma12g01257 762 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 82 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 1 117 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 47 79 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 590 611 - -
Cma12g01257 762 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 68 492 - -
Cma12g01257 762 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Cma12g01257 762 ProSiteProfiles CRC domain profile. 118 238 IPR005172 -
Cma12g01257 762 PANTHER TESMIN/TSO1-RELATED 26 82 IPR028307 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01257 - - - csv:101211978 941.799
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00634 Cma12g01257 CCT
Cma10g00634 Cma12g01257 ECH
Cma05g01345 Cma12g01257 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01345 Cma-Chr5:10160668 Cma12g01257 Cma-Chr12:9804970 0 dispersed
Cma06g00789 Cma-Chr6:4116926 Cma12g01257 Cma-Chr12:9804970 2.59E-07 dispersed
Cma12g01257 Cma-Chr12:9804970 Cma17g00222 Cma-Chr17:1133318 1.24E-28 dispersed
Cma19g00665 Cma-Chr19:6984319 Cma12g01257 Cma-Chr12:9804970 8.52E-06 dispersed
Cma05g01342 Cma-Chr5:10141296 Cma12g01257 Cma-Chr12:9804970 1.05E-43 transposed
Cma10g00634 Cma-Chr10:2900631 Cma12g01257 Cma-Chr12:9804970 0 wgd
Cma11g00619 Cma-Chr11:2966019 Cma12g01257 Cma-Chr12:9804970 1.14E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g01345 CCT,CST,ECH 136 566 CPP Transcription Factor Family AT2G20110 59.9 6.2e-136 481.9
Cma12g01257 CCT,CST,ECH 90 497 CPP Transcription Factor Family AT2G20110 59.0 3.5e-123 439.5
Cma10g00634 CCT,ECH 94 545 CPP Transcription Factor Family AT2G20110 53.4 1.0e-122 438.0
Cma11g00619 CST 518 944 CPP Transcription Factor Family AT2G20110 52.9 1.4e-116 417.5
Cma05g01345 CCT,CST,ECH 139 628 CPP Transcription Factor Family AT4G29000 57.0 2.1e-145 513.5
Cma10g00634 CCT,ECH 67 517 CPP Transcription Factor Family AT4G29000 58.2 2.5e-138 490.0
Cma11g00619 CST 489 938 CPP Transcription Factor Family AT4G29000 55.3 2.4e-133 473.4
Cma12g01257 CCT,CST,ECH 99 497 CPP Transcription Factor Family AT4G29000 61.2 1.9e-130 463.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36052 PF03638 TCR 4.30E-12 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g01257 Cma_Chr12 FPKM 3.799795 3.054722 2.947933 3.77324 6.23418 6.82285 6.291922 4.67105 4.408004 4.399328