Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01257 ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGACTCCATTAGTATCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGAACGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGAATCCCCTATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGATCGACGGCCAAGGACCTATCAACTCATAGACCAGTAGCATTTCAACAGGCAAATCATGCCAAAGCCACTGCTCCTCCGTTACCATCCTTCCCCATTGCTGGTGTTGGAAGCCCGTCATTGTTGGGTCCCTCAAAGTTTACCTATAGGTCTTTAATGGCAGACATCATTCAATCACAAAATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTATCAAGTGAAGCTGCCAAAACATTTCAAGATCAAACAAATGCTACAGAAAAGCAAGCTGATTGTCAGATAGAAACTTCTGTTGCATCATCCAATCAAGATAGGTTGCAGAAAAAAGATGTATCCAACGAGAAAGCTGCAGCCGATGATCGTTCAAGCGCAAACCAGACCAACAAAACCACCACTGATGATTCCAATTCAGATGGTGGAGATGTGTCAAAGGGCGCAACCATGTCTCCCGGAACATTGGCTTTGATGTGCGACGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAATGGGTCCTGGCTGCAGCACTTCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCCGAGCAGGAGAGGATCTGTTCCACTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACTCACTCAACCATGGCACTACAAATTCTAGAACCGAAACACAAACTCATTTGGAACAACTCAACAATAAAGTTACAAAATCTTCGATCCCACCATCGGGGAAGACCACGCAGACGGTAACCGCTACAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAGGGCCGTTTCTCGGATATCATCTCGCTTGCACTCTCTTGCTTCAAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTTATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGACCATTGAATCTCGAGGATGGGGCTTAGTTCCTCAGGGATCTGATCATAATTCGGGTCAAGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGAAGGAAGGAAGGCCTACAAAAGAATAGGTTTACTCATAAAATCAATGTCTTCTTGTTGTTTCCAACAACTCTCTTCATTGGCCAATGATCCGAAATTAGGATTGTCTTTGTCAACATCCCAACCCATGAAATCTGAGAGTGTCTTTGAAGCTTCAGAGTCATTAGATCTCGATTTGTCTTCTTCATCCACAGGCAGATTCTTCAAGGACTGCTTGATCGACAATTCTCGAGCAATG 2286 45.58 MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQTPLVSQNLQQAQPKPQPQMVAASNAPLAPHSSVRTVKSESPMSRARPAVEAKDSTPKKQKQCNCKHSRYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSTHRPVAFQQANHAKATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQNLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQIETSVASSNQDRLQKKDVSNEKAAADDRSSANQTNKTTTDDSNSDGGDVSKGATMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERICSTLARSEVGNQEHSLNHGTTNSRTETQTHLEQLNNKVTKSSIPPSGKTTQTVTATVMTLSNDQRQKVLPLSSSLRRSSMASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIASARLISSLTIESRGWGLVPQGSDHNSGQVFQCLYDSFGLQEGRKAYKRIGLLIKSMSSCCFQQLSSLANDPKLGLSLSTSQPMKSESVFEASESLDLDLSSSSTGRFFKDCLIDNSRAM 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9804970 9816279 - CmaCh12G012570.1 Cma12g01257 305747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01257 762 MobiDBLite consensus disorder prediction 387 438 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 409 434 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 17 32 - -
Cma12g01257 762 SMART CXC_2 117 153 IPR033467 -
Cma12g01257 762 SMART CXC_2 198 239 IPR033467 -
Cma12g01257 762 PANTHER TESMIN/TSO1-RELATED 68 492 IPR028307 -
Cma12g01257 762 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 26 82 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 1 117 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 47 79 - -
Cma12g01257 762 MobiDBLite consensus disorder prediction 590 611 - -
Cma12g01257 762 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 68 492 - -
Cma12g01257 762 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 201 235 IPR005172 -
Cma12g01257 762 ProSiteProfiles CRC domain profile. 118 238 IPR005172 -
Cma12g01257 762 PANTHER TESMIN/TSO1-RELATED 26 82 IPR028307 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00634 Cma12g01257 CCT
Cma10g00634 Cma12g01257 ECH
Cma05g01345 Cma12g01257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01345 Cma-Chr5:10160668 Cma12g01257 Cma-Chr12:9804970 0 dispersed
Cma06g00789 Cma-Chr6:4116926 Cma12g01257 Cma-Chr12:9804970 2.59E-07 dispersed
Cma12g01257 Cma-Chr12:9804970 Cma17g00222 Cma-Chr17:1133318 1.24E-28 dispersed
Cma19g00665 Cma-Chr19:6984319 Cma12g01257 Cma-Chr12:9804970 8.52E-06 dispersed
Cma05g01342 Cma-Chr5:10141296 Cma12g01257 Cma-Chr12:9804970 1.05E-43 transposed
Cma10g00634 Cma-Chr10:2900631 Cma12g01257 Cma-Chr12:9804970 0 wgd
Cma11g00619 Cma-Chr11:2966019 Cma12g01257 Cma-Chr12:9804970 1.14E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36052 PF03638 TCR 4.30E-12 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01257 - - csv:101211978 941.799