Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01257 | ATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCGGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGACTCCATTAGTATCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGAACGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGAATCCCCTATGTCAAGAGCAAGACCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCGTTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTATCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGATCGACGGCCAAGGACCTATCAACTCATAGACCAGTAGCATTTCAACAGGCAAATCATGCCAAAGCCACTGCTCCTCCGTTACCATCCTTCCCCATTGCTGGTGTTGGAAGCCCGTCATTGTTGGGTCCCTCAAAGTTTACCTATAGGTCTTTAATGGCAGACATCATTCAATCACAAAATTTGAAGGATCTTTGCTCTGTTTTGGTTGTGCTATCAAGTGAAGCTGCCAAAACATTTCAAGATCAAACAAATGCTACAGAAAAGCAAGCTGATTGTCAGATAGAAACTTCTGTTGCATCATCCAATCAAGATAGGTTGCAGAAAAAAGATGTATCCAACGAGAAAGCTGCAGCCGATGATCGTTCAAGCGCAAACCAGACCAACAAAACCACCACTGATGATTCCAATTCAGATGGTGGAGATGTGTCAAAGGGCGCAACCATGTCTCCCGGAACATTGGCTTTGATGTGCGACGAGCAAGATACAATACTAATGGCTGCTGCTTCCCCCAACAGATTAATGGGTCCTGGCTGCAGCACTTCTTCACAACTGCCCCACAGACAAGACATGTCAGAGGTCTATGCCGAGCAGGAGAGGATCTGTTCCACTTTAGCCAGAAGTGAAGTAGGTAACCAAGAACACTCACTCAACCATGGCACTACAAATTCTAGAACCGAAACACAAACTCATTTGGAACAACTCAACAATAAAGTTACAAAATCTTCGATCCCACCATCGGGGAAGACCACGCAGACGGTAACCGCTACAGTCATGACCCTTAGTAACGATCAGCGACAGAAAGTTTTGCCTCTGTCTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAGGGCCGTTTCTCGGATATCATCTCGCTTGCACTCTCTTGCTTCAAAGCTCAACAAAAGATCTTCATCTTCTGATCCATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTTATGCCACTGCACAGTGCCATAGCTTCAGCAAGATTGATCTCGAGTCTGACCATTGAATCTCGAGGATGGGGCTTAGTTCCTCAGGGATCTGATCATAATTCGGGTCAAGTATTTCAATGCCTTTATGACAGTTTCGGTTTGCAGGAAGGAAGGAAGGCCTACAAAAGAATAGGTTTACTCATAAAATCAATGTCTTCTTGTTGTTTCCAACAACTCTCTTCATTGGCCAATGATCCGAAATTAGGATTGTCTTTGTCAACATCCCAACCCATGAAATCTGAGAGTGTCTTTGAAGCTTCAGAGTCATTAGATCTCGATTTGTCTTCTTCATCCACAGGCAGATTCTTCAAGGACTGCTTGATCGACAATTCTCGAGCAATG | 2286 | 45.58 | MGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQTPLVSQNLQQAQPKPQPQMVAASNAPLAPHSSVRTVKSESPMSRARPAVEAKDSTPKKQKQCNCKHSRYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSTHRPVAFQQANHAKATAPPLPSFPIAGVGSPSLLGPSKFTYRSLMADIIQSQNLKDLCSVLVVLSSEAAKTFQDQTNATEKQADCQIETSVASSNQDRLQKKDVSNEKAAADDRSSANQTNKTTTDDSNSDGGDVSKGATMSPGTLALMCDEQDTILMAAASPNRLMGPGCSTSSQLPHRQDMSEVYAEQERICSTLARSEVGNQEHSLNHGTTNSRTETQTHLEQLNNKVTKSSIPPSGKTTQTVTATVMTLSNDQRQKVLPLSSSLRRSSMASLRAVSRISSRLHSLASKLNKRSSSSDPSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIASARLISSLTIESRGWGLVPQGSDHNSGQVFQCLYDSFGLQEGRKAYKRIGLLIKSMSSCCFQQLSSLANDPKLGLSLSTSQPMKSESVFEASESLDLDLSSSSTGRFFKDCLIDNSRAM | 762 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9804970 | 9816279 | - | CmaCh12G012570.1 | Cma12g01257 | 305747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 387 | 438 | - | - | |
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 409 | 434 | - | - | |
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
Cma12g01257 | 762 | SMART | CXC_2 | 117 | 153 | IPR033467 | - | |
Cma12g01257 | 762 | SMART | CXC_2 | 198 | 239 | IPR033467 | - | |
Cma12g01257 | 762 | PANTHER | TESMIN/TSO1-RELATED | 68 | 492 | IPR028307 | - | |
Cma12g01257 | 762 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 26 | 82 | - | - | |
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 1 | 117 | - | - | |
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 47 | 79 | - | - | |
Cma12g01257 | 762 | MobiDBLite | consensus disorder prediction | 590 | 611 | - | - | |
Cma12g01257 | 762 | PANTHER | PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 | 68 | 492 | - | - | |
Cma12g01257 | 762 | Pfam | Tesmin/TSO1-like CXC domain, cysteine-rich domain | 201 | 235 | IPR005172 | - | |
Cma12g01257 | 762 | ProSiteProfiles | CRC domain profile. | 118 | 238 | IPR005172 | - | |
Cma12g01257 | 762 | PANTHER | TESMIN/TSO1-RELATED | 26 | 82 | IPR028307 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00634 | Cma12g01257 | CCT | |
Cma10g00634 | Cma12g01257 | ECH | |
Cma05g01345 | Cma12g01257 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g01345 | Cma-Chr5:10160668 | Cma12g01257 | Cma-Chr12:9804970 | 0 | dispersed | |
Cma06g00789 | Cma-Chr6:4116926 | Cma12g01257 | Cma-Chr12:9804970 | 2.59E-07 | dispersed | |
Cma12g01257 | Cma-Chr12:9804970 | Cma17g00222 | Cma-Chr17:1133318 | 1.24E-28 | dispersed | |
Cma19g00665 | Cma-Chr19:6984319 | Cma12g01257 | Cma-Chr12:9804970 | 8.52E-06 | dispersed | |
Cma05g01342 | Cma-Chr5:10141296 | Cma12g01257 | Cma-Chr12:9804970 | 1.05E-43 | transposed | |
Cma10g00634 | Cma-Chr10:2900631 | Cma12g01257 | Cma-Chr12:9804970 | 0 | wgd | |
Cma11g00619 | Cma-Chr11:2966019 | Cma12g01257 | Cma-Chr12:9804970 | 1.14E-169 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36052 | PF03638 | TCR | 4.30E-12 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01257 | - | - | csv:101211978 | 941.799 |