Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01259 ATGGAATCTCCATCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGACATCATCCGGAAGTACCAGATCCTCGAGCGTATCGGATCCGGCGCATATTCCGATGTTCACCGTGCACGGCGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGTGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATTGTCGTTCTGCATGAGTACTTTTGGCGCGAGGATGAGGATGCCGTGCTTGTTCTCGAGTTTCTGAAGACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGTGGAGAATCCGGGTGGAGGCTAGCGGTCGATGAGGTGAAGCGATGGATGATCCAGATTTTGAGTGGTCTTGATGCTTGTCATAGAAATATGATCGTGCATAGGGATTTGAAACCGAGCAATTTGTTGATCGCCGACGATGGCGTGCTCAAACTTGCCGATTTTGGACAGGCAAGAATATTGATGGAGCCAGAATTTGATGAATCCAATGAGATTTCACAACCAAGTGAGATGAATTCTTCTGATCAAGTACCTGCAATTTCTCAGCCACCTGCAATTTTTTCAGGAACAGAAAGTTCGGTTCGAGAAGGTAACAGAACTGAAGAACAAGAACCAATTAGCAAAGAGGAGTATTTTAGAGCTTTAGACGAGCTGAAAGCAAAAAATTCAGAAACTGAGTTTGATAAGGAAACATGTACTTATGATGGAGATACGTCTTGCATAGCAACGTGTACCACGAGTGATCTCGAAGAGGATCCATTTAAAGGTTCATCATATTCTTATGAAATGGAAGGGGGAGTTCCAGCAGATGATGGACAGGGTTCTCTCACTTCTTGCGTCGGAACTCGCTGGTTCAGGGCCCCCGAATTACTCTATGGCTCTACGAACTACGGTTTGGAGATCGACTTATGGTCGTTGGGTTGCATTTTTGCAGAACTTTTTACATTGGAACCACTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAGAATTTTCACTACTCTAGGCAACTTGACTGAAGATTCTTGGCCAAGTTGTTCCAAACTTCCAGATTTTCAGATCATATCATTCAACAACATAGACAAGCCTATTGGCCTCGAAGCATGTCTTCCCAACCGATCTCCTGATGAAATTTCCATCGTTAAAAGACTTCTTTGCTACGACCCATCTAATCGGGCGACAGCCATGGAATTGCTCCAAGACAAGTATTTCACTGATGAGCCACTTCCTGTTCCCCTGTCTGAGCTTCATATTCCTTCAATCAGAACTGGACAGGATCTGGATTCCCCTGCAGGATGGTACAACAACAATGAGTCCGACTCCGATATGGACGTACTCGGCCCCTTGAACATTACCACAAGGGCCACTCGTTACTCCGTACAATATGATTGA 1452 46.56 MESPSAKSWSIHTRPDIIRKYQILERIGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFLKTDLATVIAEAKKRGSDGGESGWRLAVDEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLIADDGVLKLADFGQARILMEPEFDESNEISQPSEMNSSDQVPAISQPPAIFSGTESSVREGNRTEEQEPISKEEYFRALDELKAKNSETEFDKETCTYDGDTSCIATCTTSDLEEDPFKGSSYSYEMEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTNYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSRIFTTLGNLTEDSWPSCSKLPDFQIISFNNIDKPIGLEACLPNRSPDEISIVKRLLCYDPSNRATAMELLQDKYFTDEPLPVPLSELHIPSIRTGQDLDSPAGWYNNNESDSDMDVLGPLNITTRATRYSVQYD 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9818409 9821027 - CmaCh12G012590.1 Cma12g01259 305749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01259 483 Gene3D Transferase(Phosphotransferase) domain 1 115 215 - -
Cma12g01259 483 Gene3D Transferase(Phosphotransferase) domain 1 272 430 - -
Cma12g01259 483 SMART serkin_6 21 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01259 483 MobiDBLite consensus disorder prediction 205 224 - -
Cma12g01259 483 PANTHER CELL DIVISION PROTEIN KINASE 18 443 - -
Cma12g01259 483 SUPERFAMILY Protein kinase-like (PK-like) 8 440 IPR011009 -
Cma12g01259 483 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01259 483 Pfam Protein kinase domain 292 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01259 483 ProSiteProfiles Protein kinase domain profile. 21 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01259 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cma12g01259 483 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Cma12g01259 483 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cma12g01259 483 PANTHER CYCLIN-DEPENDENT KINASE 10 18 443 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01346 Cma12g01259 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01259 Cma-Chr12:9818409 Cma11g00298 Cma-Chr11:1477703 2.90E-20 dispersed
Cma12g01259 Cma-Chr12:9818409 Cma05g01346 Cma-Chr5:10166568 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68984 PF00069 Pkinase 1.50E-31 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01259 - - cmax:111465522 979.548