Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01265 ATGGCCAACGCTACCGTGCCGGAGACCGACTTGGGTGGCGTAAATTCTTCGCCGTCGTCTTCGTCCTCCTCGTCTCGGGCCAAACAAGGCGGTACGCAATTGAAGCGCAGGCGAGAAAATAACAACAGCAGCAGCAGCAACAACAACAATCGACACCCAATTTACCGCGGCGTCCGAATGAGGGTGTGGGGAAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCCACGCCTGAAATGGCGGCGCGTGCTCATGACGTCGCCGCACTTACCATCAAAGGAAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTCTCCTCCTCCCCCCGCGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCTAACGTCGACCCTCCTCCACCGCCACCGCCATTATCTCCATCATCCCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATATTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA 753 54.71 MANATVPETDLGGVNSSPSSSSSSSRAKQGGTQLKRRRENNNSSSSNNNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYICGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9873149 9873901 + CmaCh12G012650.1 Cma12g01265 305755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01265 250 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Cma12g01265 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 246 - -
Cma12g01265 250 MobiDBLite consensus disorder prediction 1 53 - -
Cma12g01265 250 MobiDBLite consensus disorder prediction 141 158 - -
Cma12g01265 250 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Cma12g01265 250 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Cma12g01265 250 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Cma12g01265 250 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Cma12g01265 250 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Cma12g01265 250 MobiDBLite consensus disorder prediction 138 177 - -
Cma12g01265 250 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Cma12g01265 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 18 246 - -
Cma12g01265 250 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00253 Cma-Chr12:1285060 Cma12g01265 Cma-Chr12:9873149 7.27E-49 dispersed
Cma01g00099 Cma-Chr1:455264 Cma12g01265 Cma-Chr12:9873149 1.47E-40 wgd
Cma10g00659 Cma-Chr10:2980345 Cma12g01265 Cma-Chr12:9873149 4.95E-64 wgd
Cma11g00638 Cma-Chr11:3083677 Cma12g01265 Cma-Chr12:9873149 2.17E-63 wgd
Cma12g01265 Cma-Chr12:9873149 Cma05g01358 Cma-Chr5:10234374 2.05E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36053 PF00847 AP2 4.40E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01265 K09286 - csv:101212945 290.426