Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01265 | ATGGCCAACGCTACCGTGCCGGAGACCGACTTGGGTGGCGTAAATTCTTCGCCGTCGTCTTCGTCCTCCTCGTCTCGGGCCAAACAAGGCGGTACGCAATTGAAGCGCAGGCGAGAAAATAACAACAGCAGCAGCAGCAACAACAACAATCGACACCCAATTTACCGCGGCGTCCGAATGAGGGTGTGGGGAAAATGGGTGTCGGAAATTCGAGAGCCAAAGAAGAAGAGTAGGATCTGGCTAGGCACTTTCGCCACGCCTGAAATGGCGGCGCGTGCTCATGACGTCGCCGCACTTACCATCAAAGGAAACTCGGCTATCCTCAATTTCCCTGAACTCGCCGCCTCATTCCCCCGCCCCGTCTCCTCCTCCCCCCGCGACGTTCAATTCGCAGCCGGCCTCGCCGCCTCAATGCAACTCCCTAACGTCGACCCTCCTCCACCGCCACCGCCATTATCTCCATCATCCCAGTCGCCGTCGCCTCCGCTTTCATCGTCATCTGAGTTGGACGAGTCGACGCCGGAGGAACTGAGTGAAATCGTGAAGCTGCCGAGTTTGGGGACGAGTTACGAGGAATCGGGCGAGTTCGTGTGTGACGAGTGGCAGTATATTTGTGGGCCATGGTATCAAAATCAAAGCAGAAGGGAAGAAGAAGAAGAAGAAGCTTATGAGTACTTTAGAGATCAAATGGCAATGGCGGAAACAGAGTGTGTGATTCCCGCTTCATTTCAACCTTTACCTTTCTCGTGGTAA | 753 | 54.71 | MANATVPETDLGGVNSSPSSSSSSSRAKQGGTQLKRRRENNNSSSSNNNNRHPIYRGVRMRVWGKWVSEIREPKKKSRIWLGTFATPEMAARAHDVAALTIKGNSAILNFPELAASFPRPVSSSPRDVQFAAGLAASMQLPNVDPPPPPPPLSPSSQSPSPPLSSSSELDESTPEELSEIVKLPSLGTSYEESGEFVCDEWQYICGPWYQNQSRREEEEEEAYEYFRDQMAMAETECVIPASFQPLPFSW | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9873149 | 9873901 | + | CmaCh12G012650.1 | Cma12g01265 | 305755 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01265 | 250 | CDD | AP2 | 53 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 18 | 246 | - | - | |
Cma12g01265 | 250 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Cma12g01265 | 250 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
Cma12g01265 | 250 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | Gene3D | AP2/ERF domain | 54 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | SUPERFAMILY | DNA-binding domain | 54 | 112 | IPR016177 | GO:0003677 | |
Cma12g01265 | 250 | Pfam | AP2 domain | 53 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | MobiDBLite | consensus disorder prediction | 138 | 177 | - | - | |
Cma12g01265 | 250 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 | |
Cma12g01265 | 250 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 18 | 246 | - | - | |
Cma12g01265 | 250 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g00253 | Cma-Chr12:1285060 | Cma12g01265 | Cma-Chr12:9873149 | 7.27E-49 | dispersed | |
Cma01g00099 | Cma-Chr1:455264 | Cma12g01265 | Cma-Chr12:9873149 | 1.47E-40 | wgd | |
Cma10g00659 | Cma-Chr10:2980345 | Cma12g01265 | Cma-Chr12:9873149 | 4.95E-64 | wgd | |
Cma11g00638 | Cma-Chr11:3083677 | Cma12g01265 | Cma-Chr12:9873149 | 2.17E-63 | wgd | |
Cma12g01265 | Cma-Chr12:9873149 | Cma05g01358 | Cma-Chr5:10234374 | 2.05E-91 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36053 | PF00847 | AP2 | 4.40E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01265 | K09286 | - | csv:101212945 | 290.426 |