Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01274 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATCGATGGCCAAGGCCAGCACCTCACTGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCGCATTTCCTCAGTGCAAGCCTCAAGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGGCATCTTGCACCTACTGGATTACATATTGCAGGCACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCCTCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTAGTCGATCAGGGTCTAAACGAGCAAGGAAGGGGGGGAAAAAAAAAAAACAAACTCTTAAGAGATCGAACCAGAAGAAAGAGGAAGAAGAAGCGGAGAAAGATGTCGTGGAATGTTTACGTCGATGATCATCTTATGTGCGACATTGAGGGCAATCACCTCACATCTGCGGCCATCATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGATTCTTTCCCTCAGTTCAAGCCTGAAGAAATTACTGCCATCATGAATGACTTCAATGAACCCGGGGTGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTCATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTAGTTTGGCTCTAATCATTGGCATCTATGATGAACCAATGACTCCCGGTCAGTGCAATATGATTGTTGAAAGGCTTGGAGATTATCTCATCGAACAGGGTCTCTAA 879 48.35 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSAAFPQCKPQEITGIMKDFDEPGHLAPTGLHIAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGLNEQGRGGKKKNKLLRDRTRRKRKKKRRKMSWNVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSDSFPQFKPEEITAIMNDFNEPGVLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTSLALIIGIYDEPMTPGQCNMIVERLGDYLIEQGL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9918513 9923597 + CmaCh12G012740.1 Cma12g01274 305764

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01274 292 Pfam Profilin 1 132 IPR005455 GO:0003779
Cma12g01274 292 Pfam Profilin 162 291 IPR005455 GO:0003779
Cma12g01274 292 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cma12g01274 292 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cma12g01274 292 PANTHER PROFILIN 162 292 - -
Cma12g01274 292 PANTHER PROFILIN 1 133 - -
Cma12g01274 292 SUPERFAMILY Profilin (actin-binding protein) 163 291 IPR036140 -
Cma12g01274 292 CDD PROF 163 291 IPR005455 GO:0003779
Cma12g01274 292 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cma12g01274 292 SMART prof_2 162 292 IPR005455 GO:0003779
Cma12g01274 292 SMART prof_2 1 133 IPR005455 GO:0003779
Cma12g01274 292 CDD PROF 2 132 IPR005455 GO:0003779
Cma12g01274 292 Gene3D Dynein light chain 2a, cytoplasmic 160 292 - -
Cma12g01274 292 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cma12g01274 292 PANTHER PROFILIN 162 292 IPR005455 GO:0003779
Cma12g01274 292 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01274 K05759 PFN; profilin - twl:120006331 256.529
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01374 Cma-Chr5:10333305 Cma12g01274 Cma-Chr12:9918513 2.85E-74 dispersed
Cma08g00743 Cma-Chr8:4459692 Cma12g01274 Cma-Chr12:9918513 2.15E-76 dispersed
Cma12g01274 Cma-Chr12:9918513 Cma17g00758 Cma-Chr17:6120509 1.07E-77 dispersed
Cma12g01274 Cma-Chr12:9918513 Cma14g01287 Cma-Chr14:10164737 3.22E-65 wgd
Cma12g01274 Cma-Chr12:9918513 Cma05g01373 Cma-Chr5:10326136 2.56E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT2G37620 96.3 7.9e-215 743.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 1.1e-213 739.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT2G37620 96.3 1.5e-213 739.2
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT2G37620 95.8 1.3e-212 736.1
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.8e-212 734.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 2.8e-212 734.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT2G37620 95.2 2.8e-212 734.9
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT2G37620 95.5 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 4.8e-212 734.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT2G37620 95.5 4.8e-212 734.2
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT2G37620 96.2 2.9e-209 724.9
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT2G37620 93.2 1.9e-200 695.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G59370 96.8 8.7e-214 740.0
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G59370 96.3 3.3e-213 738.0
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G59370 96.6 4.3e-213 737.6
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G59370 96.3 1.6e-212 735.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 2.2e-212 735.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G59370 95.8 3.7e-212 734.6
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G59370 95.8 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G59370 95.8 5.3e-211 730.7
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G59370 93.9 1.2e-210 729.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 1.2e-210 729.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 4.5e-210 727.6
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G59370 96.0 7.2e-208 720.3
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G59370 94.3 5.9e-202 700.7
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G46520 97.1 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G46520 96.6 1.5e-213 739.2
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G46520 96.8 1.9e-213 738.8
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G46520 96.6 7.4e-213 736.9
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 9.7e-213 736.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G46520 96.0 1.6e-212 735.7
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G46520 96.0 3.7e-212 734.6
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G46520 96.0 2.4e-211 731.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G46520 94.2 5.3e-211 730.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 5.3e-211 730.7
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 2.0e-210 728.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G46520 95.7 2.1e-207 718.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G46520 94.6 2.6e-202 701.8
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G12110 96.8 4.6e-215 744.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G12110 96.8 3.9e-214 741.1
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 8.7e-214 740.0
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G12110 96.3 8.7e-214 740.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G12110 96.6 1.1e-213 739.6
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G12110 96.0 4.3e-213 737.6
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 1.3e-212 736.1
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 3.7e-212 734.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G12110 95.0 8.2e-212 733.4
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G12110 96.0 3.8e-209 724.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G12110 93.5 2.9e-201 698.4
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 6.5e-209 723.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.4e-208 722.6
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT3G18780 92.0 3.2e-208 721.5
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT3G18780 91.8 5.5e-208 720.7
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT3G18780 91.8 7.2e-208 720.3
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT3G18780 91.8 9.4e-208 719.9
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 1.6e-207 719.2
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.6e-207 719.2
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT3G18780 91.5 2.1e-207 718.8
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-206 716.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT3G18780 91.2 3.0e-206 714.9
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT3G18780 91.4 1.2e-202 703.0
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT3G18780 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 2.2e-209 725.3
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.0e-209 724.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT1G49240 92.3 1.1e-208 723.0
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT1G49240 92.0 2.5e-208 721.8
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT1G49240 92.0 3.2e-208 721.5
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 5.5e-208 720.7
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 5.5e-208 720.7
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT1G49240 91.8 7.2e-208 720.3
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT1G49240 91.5 1.2e-207 719.5
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT1G49240 91.5 3.0e-206 714.9
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT1G49240 91.0 6.7e-206 713.8
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT1G49240 91.1 2.6e-202 701.8
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT1G49240 90.3 1.5e-197 686.0
Cma07g00783 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma20g01073 CCT 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma03g01077 CCT,CST 30 406 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma02g00615 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 1.1e-216 749.6
Cma11g01622 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.1e-215 743.8
Cma19g00282 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.9e-214 741.1
Cma02g00806 CST 45 421 Cytoskeleton Gene Families AT5G09810 95.2 1.3e-212 736.1
Cma20g00406 CST 1 377 Cytoskeleton Gene Families AT5G09810 95.5 2.8e-212 734.9
Cma14g00415 . 38 414 Cytoskeleton Gene Families AT5G09810 95.8 3.7e-212 734.6
Cma06g00102 . 48 424 Cytoskeleton Gene Families AT5G09810 95.8 4.8e-212 734.2
Cma04g01189 CCT,CST 70 446 Cytoskeleton Gene Families AT5G09810 95.5 6.3e-212 733.8
Cma15g00386 CCT 1 377 Cytoskeleton Gene Families AT5G09810 95.5 8.2e-212 733.4
Cma07g00992 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 1.4e-211 732.6
Cma04g00220 CCT,CST 1 377 Cytoskeleton Gene Families AT5G09810 95.0 4.1e-211 731.1
Cma03g00427 . 1 371 Cytoskeleton Gene Families AT5G09810 95.1 1.2e-207 719.5
Cma04g02644 . 240 609 Cytoskeleton Gene Families AT5G09810 93.0 5.5e-200 694.1
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT2G19760 76.3 3.1e-57 218.4
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT2G19760 77.1 3.1e-57 218.4
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT2G19760 75.9 3.4e-56 214.9
Cma08g00743 CCT,CST,ECH 135 264 Cytoskeleton Gene Families AT2G19760 73.8 1.7e-55 212.6
Cma14g01287 . 1077 1205 Cytoskeleton Gene Families AT2G19760 73.6 5.5e-54 207.6
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT2G19760 71.1 2.0e-48 189.1
Cma01g00091 CCT,ECH 1 179 Cytoskeleton Gene Families AT2G19760 52.5 5.5e-46 181.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29350 76.3 9.0e-57 216.9
Cma12g01274 . 162 292 Cytoskeleton Gene Families AT4G29350 76.3 2.6e-56 215.3
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29350 74.4 1.4e-54 209.5
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29350 72.9 1.2e-53 206.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29350 71.8 1.3e-52 203.0
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29350 70.3 4.9e-47 184.5
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29350 50.3 2.3e-44 175.6
Cma12g01274 . 1 133 Cytoskeleton Gene Families AT4G29340 85.1 5.9e-64 240.7
Cma05g01374 . 1 133 Cytoskeleton Gene Families AT4G29340 83.6 3.9e-63 238.0
Cma17g00758 CCT,CST,ECH 1 131 Cytoskeleton Gene Families AT4G29340 76.9 4.4e-59 224.6
Cma08g00743 CCT,CST,ECH 135 263 Cytoskeleton Gene Families AT4G29340 76.5 1.4e-57 219.5
Cma14g01287 . 1077 1207 Cytoskeleton Gene Families AT4G29340 70.1 1.1e-52 203.4
Cma05g01373 CST 1 128 Cytoskeleton Gene Families AT4G29340 64.9 1.9e-46 182.6
Cma01g00091 CCT,ECH 1 181 Cytoskeleton Gene Families AT4G29340 51.1 5.6e-46 181.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018613 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g01274 Cma_Chr12 FPKM 50.371193 57.272362 62.350594 61.801586 35.782463 32.643761 32.66589 77.718712 83.016296 79.294319