Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01274 ATGTCGTGGCAAACGTATGTTGATGATCATTTGATGTGCGACATCGATGGCCAAGGCCAGCACCTCACTGCCGCTGCCATTATCGGCCACGATGGCAGCGTCTGGGCTCAGAGCGCCGCATTTCCTCAGTGCAAGCCTCAAGAGATCACTGGTATCATGAAGGATTTTGATGAACCAGGGCATCTTGCACCTACTGGATTACATATTGCAGGCACAAAGTACATGGTAATCCAAGGAGAGCCTGGAGCGGTCATCCGTGGAAAGAAGGGTTCTGGAGGAATTACCATAAAGAAGACTGGTCAAGCTCTAGTTTTTGGCCTCTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTGGGCGATTACCTAGTCGATCAGGGTCTAAACGAGCAAGGAAGGGGGGGAAAAAAAAAAAACAAACTCTTAAGAGATCGAACCAGAAGAAAGAGGAAGAAGAAGCGGAGAAAGATGTCGTGGAATGTTTACGTCGATGATCATCTTATGTGCGACATTGAGGGCAATCACCTCACATCTGCGGCCATCATCGGCCATGACGGCAGCGTTTGGGCCCAAAGCGATTCTTTCCCTCAGTTCAAGCCTGAAGAAATTACTGCCATCATGAATGACTTCAATGAACCCGGGGTGCTTGCTCCAACTGGTTTGTACCTTGGTGGTGCAAAATATATGGTAATCCAAGGGGAGCCTGGAGCTGTCATTCGTGGGAAGAAGGGCCCAGGTGGGGTTACTGTTAAGAAGACTAGTTTGGCTCTAATCATTGGCATCTATGATGAACCAATGACTCCCGGTCAGTGCAATATGATTGTTGAAAGGCTTGGAGATTATCTCATCGAACAGGGTCTCTAA 879 48.35 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSAAFPQCKPQEITGIMKDFDEPGHLAPTGLHIAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGLYEEPVTPGQCNMVVERLGDYLVDQGLNEQGRGGKKKNKLLRDRTRRKRKKKRRKMSWNVYVDDHLMCDIEGNHLTSAAIIGHDGSVWAQSDSFPQFKPEEITAIMNDFNEPGVLAPTGLYLGGAKYMVIQGEPGAVIRGKKGPGGVTVKKTSLALIIGIYDEPMTPGQCNMIVERLGDYLIEQGL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9918513 9923597 + CmaCh12G012740.1 Cma12g01274 305764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01274 292 Pfam Profilin 1 132 IPR005455 GO:0003779
Cma12g01274 292 Pfam Profilin 162 291 IPR005455 GO:0003779
Cma12g01274 292 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cma12g01274 292 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cma12g01274 292 PANTHER PROFILIN 162 292 - -
Cma12g01274 292 PANTHER PROFILIN 1 133 - -
Cma12g01274 292 SUPERFAMILY Profilin (actin-binding protein) 163 291 IPR036140 -
Cma12g01274 292 CDD PROF 163 291 IPR005455 GO:0003779
Cma12g01274 292 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cma12g01274 292 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cma12g01274 292 SMART prof_2 162 292 IPR005455 GO:0003779
Cma12g01274 292 SMART prof_2 1 133 IPR005455 GO:0003779
Cma12g01274 292 CDD PROF 2 132 IPR005455 GO:0003779
Cma12g01274 292 Gene3D Dynein light chain 2a, cytoplasmic 160 292 - -
Cma12g01274 292 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cma12g01274 292 PANTHER PROFILIN 162 292 IPR005455 GO:0003779
Cma12g01274 292 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01374 Cma-Chr5:10333305 Cma12g01274 Cma-Chr12:9918513 2.85E-74 dispersed
Cma08g00743 Cma-Chr8:4459692 Cma12g01274 Cma-Chr12:9918513 2.15E-76 dispersed
Cma12g01274 Cma-Chr12:9918513 Cma17g00758 Cma-Chr17:6120509 1.07E-77 dispersed
Cma12g01274 Cma-Chr12:9918513 Cma14g01287 Cma-Chr14:10164737 3.22E-65 wgd
Cma12g01274 Cma-Chr12:9918513 Cma05g01373 Cma-Chr5:10326136 2.56E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01274 K05759 - twl:120006331 256.529