Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01275 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGACGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGACTGCAAAGAGGTTGATGCCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTCATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAGACAATTCTTGAACCATATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTCATTAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGCTCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTAACTAG 1044 42.34 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDCKEVDADFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPEFCSFVIKKDPKERSSSLALLNHPFIKKFEDKDIDVGILVGSLDPPN 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9924976 9928241 + CmaCh12G012750.1 Cma12g01275 305765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01275 347 SMART serkin_6 69 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 ProSiteProfiles Protein kinase domain profile. 69 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 346 - -
Cma12g01275 347 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 346 - -
Cma12g01275 347 Pfam Protein kinase domain 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 SUPERFAMILY Protein kinase-like (PK-like) 67 332 IPR011009 -
Cma12g01275 347 Gene3D Transferase(Phosphotransferase) domain 1 150 340 - -
Cma12g01275 347 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cma12g01275 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cma12g01275 347 Gene3D Phosphorylase Kinase; domain 1 37 148 - -
Cma12g01275 347 CDD PKc_MAPKK_plant_like 67 330 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01373 Cma12g01275 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00741 Cma-Chr10:3371796 Cma12g01275 Cma-Chr12:9924976 2.97E-159 dispersed
Cma11g00712 Cma-Chr11:3472591 Cma12g01275 Cma-Chr12:9924976 3.71E-146 dispersed
Cma12g01275 Cma-Chr12:9924976 Cma12g01322 Cma-Chr12:10107708 9.77E-144 dispersed
Cma12g01275 Cma-Chr12:9924976 Cma05g01373 Cma-Chr5:10326136 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68986 PF00069 Pkinase 2.40E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01275 K04368 - csv:101218848 655.21