Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01275 | ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGACGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGACTGCAAAGAGGTTGATGCCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTCATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAGACAATTCTTGAACCATATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTCATTAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGCTCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTAACTAG | 1044 | 42.34 | MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDCKEVDADFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPEFCSFVIKKDPKERSSSLALLNHPFIKKFEDKDIDVGILVGSLDPPN | 347 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9924976 | 9928241 | + | CmaCh12G012750.1 | Cma12g01275 | 305765 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01275 | 347 | SMART | serkin_6 | 69 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01275 | 347 | ProSiteProfiles | Protein kinase domain profile. | 69 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01275 | 347 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 1 | 346 | - | - | |
Cma12g01275 | 347 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 1 | 346 | - | - | |
Cma12g01275 | 347 | Pfam | Protein kinase domain | 70 | 326 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01275 | 347 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 332 | IPR011009 | - | |
Cma12g01275 | 347 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 340 | - | - | |
Cma12g01275 | 347 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524 | |
Cma12g01275 | 347 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g01275 | 347 | Gene3D | Phosphorylase Kinase; domain 1 | 37 | 148 | - | - | |
Cma12g01275 | 347 | CDD | PKc_MAPKK_plant_like | 67 | 330 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01373 | Cma12g01275 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00741 | Cma-Chr10:3371796 | Cma12g01275 | Cma-Chr12:9924976 | 2.97E-159 | dispersed | |
Cma11g00712 | Cma-Chr11:3472591 | Cma12g01275 | Cma-Chr12:9924976 | 3.71E-146 | dispersed | |
Cma12g01275 | Cma-Chr12:9924976 | Cma12g01322 | Cma-Chr12:10107708 | 9.77E-144 | dispersed | |
Cma12g01275 | Cma-Chr12:9924976 | Cma05g01373 | Cma-Chr5:10326136 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68986 | PF00069 | Pkinase | 2.40E-61 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01275 | K04368 | - | csv:101218848 | 655.21 |