Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01275 ATGAAGACCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGCTCAAGAAACTTCTATCCGTTCTTTTCTAACTGCGAGCGGAACATTTCACGACGGCAATCTGCTTTTGAACCAGAAAGGATTGCGGCTTGTATCTGAAGAGAAAGAAACGCAGACTTCAGACTGCAAAGAGGTTGATGCCGATTTCTCATTGGAGGATCTAGAGACTGTGAAAGTCATCGGAAAAGGAAGTGGAGGTGTAGTACAACTTGTTCAACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTCATCCAAATGAACATACAAGAGGATATCCGTAAACAGATAGTGCAGGAACTGAAAATAAACCAAGCAGCACAATGTCCACATATTGTGGTCTGCCATCATTCTTTCTACCACAATGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCTGATGTTGTCAGACAAGTCAAGACAATTCTTGAACCATATCTTGCAGTTGTTTGCAAACAGGTTTTACAAGGTCTTGTTTACTTGCATCATGAGAGACATGTTATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGATGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTTGCAAGTTCTATGGGTCAGAGAGATACATTTGTTGGGACTTACAATTACATGTCGCCTGAGCGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTCTGGTAGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTTTTAGAGGCCATTGTAGCAAAGCCACCGCCTTCTGCTCCATCGGATCAATTTTCCCCTGAGTTCTGTTCATTCGTCATTAAGAAGGACCCTAAAGAAAGATCATCTTCATTAGCTCTTCTGAATCACCCTTTCATCAAGAAATTCGAGGACAAAGACATCGATGTTGGGATTCTCGTTGGCAGCTTGGATCCTCCTAACTAG 1044 42.34 MKTKTPLKQLKLSVPAQETSIRSFLTASGTFHDGNLLLNQKGLRLVSEEKETQTSDCKEVDADFSLEDLETVKVIGKGSGGVVQLVQHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCHHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGDVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPSDQFSPEFCSFVIKKDPKERSSSLALLNHPFIKKFEDKDIDVGILVGSLDPPN 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9924976 9928241 + CmaCh12G012750.1 Cma12g01275 305765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01275 347 SMART serkin_6 69 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 ProSiteProfiles Protein kinase domain profile. 69 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 346 - -
Cma12g01275 347 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 346 - -
Cma12g01275 347 Pfam Protein kinase domain 70 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01275 347 SUPERFAMILY Protein kinase-like (PK-like) 67 332 IPR011009 -
Cma12g01275 347 Gene3D Transferase(Phosphotransferase) domain 1 150 340 - -
Cma12g01275 347 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cma12g01275 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cma12g01275 347 Gene3D Phosphorylase Kinase; domain 1 37 148 - -
Cma12g01275 347 CDD PKc_MAPKK_plant_like 67 330 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01275 K04368 MAP2K1, MEK1; mitogen-activated protein kinase kinase 1 [EC:2.7.12.2] - csv:101218848 655.21
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma05g01373 Cma12g01275 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00741 Cma-Chr10:3371796 Cma12g01275 Cma-Chr12:9924976 2.97E-159 dispersed
Cma11g00712 Cma-Chr11:3472591 Cma12g01275 Cma-Chr12:9924976 3.71E-146 dispersed
Cma12g01275 Cma-Chr12:9924976 Cma12g01322 Cma-Chr12:10107708 9.77E-144 dispersed
Cma12g01275 Cma-Chr12:9924976 Cma05g01373 Cma-Chr5:10326136 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00741 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.5 1.5e-135 479.9
Cma12g01322 . 60 384 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.5e-127 452.6
Cma11g00712 CST 28 326 MAP Kinase Kinase Gene Family AT4G26070 69.2 2.1e-121 433.0
Cma12g01275 CST 26 346 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.7e-104 374.8
Cma05g01373 CST 136 427 MAP Kinase Kinase Gene Family AT4G26070 57.3 6.9e-101 364.8
Cma10g00741 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 4.7e-134 474.9
Cma11g00712 CST 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.0 2.4e-130 462.6
Cma12g01322 . 34 358 MAP Kinase Kinase Gene Family AT4G29810 63.1 9.9e-116 414.1
Cma12g01275 CST 10 321 MAP Kinase Kinase Gene Family AT4G29810 59.1 2.2e-107 386.3
Cma05g01373 CST 128 400 MAP Kinase Kinase Gene Family AT4G29810 61.9 1.2e-100 364.0
Cma14g00668 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT1G51660 67.7 3.7e-132 468.8
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.2e-128 455.7
Cma13g00976 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.6e-82 303.9
Cma18g00086 . 31 306 MAP Kinase Kinase Gene Family AT1G51660 54.7 7.7e-82 301.6
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT3G21220 64.5 6.1e-129 458.0
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.5 1.0e-128 457.2
Cma13g00976 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.0e-83 307.8
Cma18g00086 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 55.2 2.5e-82 303.1
Cma12g01275 CST 1 346 MAP Kinase Kinase Gene Family AT5G56580 82.9 1.6e-164 576.2
Cma05g01373 CST 131 430 MAP Kinase Kinase Gene Family AT5G56580 84.7 3.9e-147 518.5
Cma10g00741 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-118 423.7
Cma11g00712 CST 7 328 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.5e-109 392.9
Cma12g01322 . 34 383 MAP Kinase Kinase Gene Family AT5G56580 55.1 2.3e-107 386.3
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 2.6e-107 386.0
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.0 2.4e-105 379.4
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 3.1e-76 282.7
Cma13g00976 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.2e-79 293.1
Cma18g00086 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.2 2.3e-76 283.1
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.4e-113 406.8
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.7e-109 393.3
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68986 PF00069 Pkinase 2.40E-61 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g01275 Cma_Chr12 FPKM 8.442533 8.633677 0.929567 0.80424 18.026743 17.859591 20.98982 0.39017 0.647011 0.0