Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01280 | ATGAAGATAGTGGAATTGGAAGATGCTGGGACTGATCGGGAAGATGAAATTGGTAGCGGTCAGATTGTGAAGGTGGATGCTAAAAGAGCTTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTCTACAACGTTCTTCGTAATAAAATGGAAGCCGAATTTAGATGGTGGGATGAAGTCGATCAGTATCTTCTGCTGGGTGCAGTGCCGTTCCCCAAACACGTGCCGAGATTGAAGAAGCTCGGTGTTGGCGGCGTGATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTGTATTATCGCCATGGAATTGACCACTTACAAATCCCCACCAGAGATTACTGTTTTGCTCCTAAATTTTCTGATATTAGACGTGCTGTGGACTTCATTCACAGAAATGCATCATCTGGTAAAACGACATACGTCCATTGTAAAGCAGGGCGAGGAAGGAGCACGACCGTTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCCGCCCTGGAATATGTGCGCTTGAGAAGACCACGCGTGTTGCTCGCCCCATCGCAGTGGGAGAATACAGCAACTGTCGTCCAGCTACGAGTTCCAGCTCACCCTCAGGAGGAGATGCGGTGCTCATTACGAAAGACGATCTAG | 666 | 47.6 | MKIVELEDAGTDREDEIGSGQIVKVDAKRALVGAGARILFYPTLFYNVLRNKMEAEFRWWDEVDQYLLLGAVPFPKHVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLQIPTRDYCFAPKFSDIRRAVDFIHRNASSGKTTYVHCKAGRGRSTTVVLCYLVKYKHMTPSAALEYVRLRRPRVLLAPSQWENTATVVQLRVPAHPQEEMRCSLRKTI | 221 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9944620 | 9946979 | + | CmaCh12G012800.1 | Cma12g01280 | 305770 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01280 | 221 | Gene3D | Protein tyrosine phosphatase superfamily | 59 | 202 | IPR029021 | - | |
Cma12g01280 | 221 | SMART | dsp_5 | 62 | 197 | IPR020422 | GO:0006470|GO:0008138 | |
Cma12g01280 | 221 | Pfam | Dual specificity phosphatase, catalytic domain | 81 | 194 | IPR000340 | GO:0008138|GO:0016311 | |
Cma12g01280 | 221 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 52 | 195 | IPR029021 | - | |
Cma12g01280 | 221 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8 ISOFORM X1-RELATED | 7 | 205 | - | - | |
Cma12g01280 | 221 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 148 | 158 | IPR016130 | GO:0016311|GO:0016791 | |
Cma12g01280 | 221 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 59 | 206 | IPR020422 | GO:0006470|GO:0008138 | |
Cma12g01280 | 221 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 127 | 195 | IPR000387 | GO:0016311|GO:0016791 | |
Cma12g01280 | 221 | PANTHER | - | 7 | 205 | - | - | |
Cma12g01280 | 221 | CDD | PTPMT1 | 59 | 196 | IPR044596 | GO:0004721 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma05g01379 | Cma12g01280 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00800 | Cma-Chr6:4205467 | Cma12g01280 | Cma-Chr12:9944620 | 2.53E-94 | dispersed | |
Cma12g01280 | Cma-Chr12:9944620 | Cma16g01120 | Cma-Chr16:8607615 | 6.95E-94 | dispersed | |
Cma12g01280 | Cma-Chr12:9944620 | Cma05g01379 | Cma-Chr5:10345158 | 9.65E-136 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01280 | - | - | bhj:120080407 | 367.081 |