Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01280 ATGAAGATAGTGGAATTGGAAGATGCTGGGACTGATCGGGAAGATGAAATTGGTAGCGGTCAGATTGTGAAGGTGGATGCTAAAAGAGCTTTGGTTGGGGCTGGGGCTCGAATCTTGTTTTACCCTACCCTTTTCTACAACGTTCTTCGTAATAAAATGGAAGCCGAATTTAGATGGTGGGATGAAGTCGATCAGTATCTTCTGCTGGGTGCAGTGCCGTTCCCCAAACACGTGCCGAGATTGAAGAAGCTCGGTGTTGGCGGCGTGATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCCTTGTATTATCGCCATGGAATTGACCACTTACAAATCCCCACCAGAGATTACTGTTTTGCTCCTAAATTTTCTGATATTAGACGTGCTGTGGACTTCATTCACAGAAATGCATCATCTGGTAAAACGACATACGTCCATTGTAAAGCAGGGCGAGGAAGGAGCACGACCGTTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCGTCTGCCGCCCTGGAATATGTGCGCTTGAGAAGACCACGCGTGTTGCTCGCCCCATCGCAGTGGGAGAATACAGCAACTGTCGTCCAGCTACGAGTTCCAGCTCACCCTCAGGAGGAGATGCGGTGCTCATTACGAAAGACGATCTAG 666 47.6 MKIVELEDAGTDREDEIGSGQIVKVDAKRALVGAGARILFYPTLFYNVLRNKMEAEFRWWDEVDQYLLLGAVPFPKHVPRLKKLGVGGVITLNEPYETLVPSSLYYRHGIDHLQIPTRDYCFAPKFSDIRRAVDFIHRNASSGKTTYVHCKAGRGRSTTVVLCYLVKYKHMTPSAALEYVRLRRPRVLLAPSQWENTATVVQLRVPAHPQEEMRCSLRKTI 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9944620 9946979 + CmaCh12G012800.1 Cma12g01280 305770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01280 221 Gene3D Protein tyrosine phosphatase superfamily 59 202 IPR029021 -
Cma12g01280 221 SMART dsp_5 62 197 IPR020422 GO:0006470|GO:0008138
Cma12g01280 221 Pfam Dual specificity phosphatase, catalytic domain 81 194 IPR000340 GO:0008138|GO:0016311
Cma12g01280 221 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 195 IPR029021 -
Cma12g01280 221 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8 ISOFORM X1-RELATED 7 205 - -
Cma12g01280 221 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cma12g01280 221 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cma12g01280 221 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Cma12g01280 221 PANTHER - 7 205 - -
Cma12g01280 221 CDD PTPMT1 59 196 IPR044596 GO:0004721
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g01379 Cma12g01280 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00800 Cma-Chr6:4205467 Cma12g01280 Cma-Chr12:9944620 2.53E-94 dispersed
Cma12g01280 Cma-Chr12:9944620 Cma16g01120 Cma-Chr16:8607615 6.95E-94 dispersed
Cma12g01280 Cma-Chr12:9944620 Cma05g01379 Cma-Chr5:10345158 9.65E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01280 - - bhj:120080407 367.081