Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01284 | ATGATGATCGATGAGCAACCTAACCGACCTAATCAGAAGCTTCACGTTCCGCCTTGGGCGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCAGTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTACCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGTTTCAGGTCGGGAGCCGGATTCTCCGGTGGATACGTACTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACCGCGTGTGCGGATTTTCGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATCGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCGGAGCAGCTTAGGATTTTGCCTCAGCAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCAATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATTGAGTCTCCGCCTCAATCGCCGATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCGGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAGCCCGGCGGCGGAAGTGTGGACGTTGGTTGGATATCGGAGCTTCTCAAGTAA | 1194 | 53.02 | MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGGSGSGSGSGSGVKCDGCSSGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK | 397 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9983593 | 9984786 | + | CmaCh12G012840.1 | Cma12g01284 | 305774 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01284 | 397 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
Cma12g01284 | 397 | SMART | c3hfinal6 | 180 | 203 | IPR000571 | GO:0046872 | |
Cma12g01284 | 397 | SMART | c3hfinal6 | 145 | 171 | IPR000571 | GO:0046872 | |
Cma12g01284 | 397 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 150 | 170 | IPR000571 | GO:0046872 | |
Cma12g01284 | 397 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 10 | 396 | - | - | |
Cma12g01284 | 397 | MobiDBLite | consensus disorder prediction | 32 | 50 | - | - | |
Cma12g01284 | 397 | PANTHER | UNKEMPT FAMILY MEMBER | 10 | 396 | IPR045234 | - | |
Cma12g01284 | 397 | Gene3D | - | 145 | 208 | - | - | |
Cma12g01284 | 397 | MobiDBLite | consensus disorder prediction | 243 | 262 | - | - | |
Cma12g01284 | 397 | ProSiteProfiles | Zinc finger C3H1-type profile. | 145 | 172 | IPR000571 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma11g00671 | Cma-Chr11:3249244 | Cma12g01284 | Cma-Chr12:9983593 | 2.08E-153 | dispersed | |
Cma11g01912 | Cma-Chr11:12641174 | Cma12g01284 | Cma-Chr12:9983593 | 9.09E-64 | dispersed | |
Cma12g00622 | Cma-Chr12:3290026 | Cma12g01284 | Cma-Chr12:9983593 | 7.27E-74 | dispersed | |
Cma12g01284 | Cma-Chr12:9983593 | Cma19g00995 | Cma-Chr19:8638814 | 1.53E-65 | dispersed | |
Cma10g00690 | Cma-Chr10:3123164 | Cma12g01284 | Cma-Chr12:9983593 | 2.51E-156 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36055 | PF00642 | zf-CCCH | 4.60E-05 | CL0537 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01284 | - | - | cmax:111465573 | 782.711 |