Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01284 ATGATGATCGATGAGCAACCTAACCGACCTAATCAGAAGCTTCACGTTCCGCCTTGGGCGTTTATGGAAGATCCGGCGTCGGATGGGTACAGTCATTCGCCGGGAAGCGGCGGCAGCGGAAGTGGAAGTGGAAGCGGAAGCGGAGTCAAGTGCGACGGATGTTCCAGTGGAGATGGATACTCTCCTTTTTATCTTCAGGAAGCATTGGCGATGCTGCAGCAGTACTTACCGTCGAAAGAGGCAGAGGTGGAATCGGATCTTGATGTTTCAGGTCGGGAGCCGGATTCTCCGGTGGATACGTACTCCTCCGATCAGTTTCGAATGTACGAGTTCAAGATTAAGAAGTGTTTGCGAGGAAGATCGCACGACTGGACCGAGTGCCCGTTCGCTCATCCCGGCGAGAAGGCTCGCCGGCGAGATCCGAGGAAGTATTACTATTCTGGTACCGCGTGTGCGGATTTTCGGAAGGGGAACTGTAATAAAGGAGATGCGTGTGAGTTCGCTCATGGAGTTTTCGAGTGCTGGCTTCATCCGGCTCGATATCGGACTCAGCCGTGCAAGGATGGAACGAGTTGCCGAAGGAGAGTTTGCTTCTTTGCTCATACGCCGGAGCAGCTTAGGATTTTGCCTCAGCAGAGTCCTCGGAGTACGAGTTCCATCCCTTCATACGACGGATCTCCTCTTCGGCAAGCAATTGAGGCCTGTGCGAAACAAATGCCCTATTTATCTTCTTCAGGAACATCGACGCCGGTATCTCCTCGAATTGAGTCTCCGCCTCAATCGCCGATGTTTAGATCACTTAATCGACCGCACGCGACTAGTTCGATCAACGAAATGGTAGCGTCGCTACGAAGTTTACAACTCCACAAGGAACTCGGTAAAGTGCAATCTCCTTCTTCGTTGTGGAATGTTCAAGTCGGATCTCCTGTGTTCGGATCTCCAGGGGAATCCAGCGCTCGTTCTGGCTTCGGTAGCCTTCCAGATACTCCAACTCCTCCTGCCGTCCGATATCTCGATTTCTGGGACCTAGGTTGCGGCGAGGAACAGGCGATGGCGCGAGTGGAATCCGGGAGAGATTTACGAGCAAAAATGCTGGAGAAATTACGAAAGGAGAACTCCGTCGCGTGCGGCGATCAGGAGAAGCCCGGCGGCGGAAGTGTGGACGTTGGTTGGATATCGGAGCTTCTCAAGTAA 1194 53.02 MMIDEQPNRPNQKLHVPPWAFMEDPASDGYSHSPGSGGSGSGSGSGSGVKCDGCSSGDGYSPFYLQEALAMLQQYLPSKEAEVESDLDVSGREPDSPVDTYSSDQFRMYEFKIKKCLRGRSHDWTECPFAHPGEKARRRDPRKYYYSGTACADFRKGNCNKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSTSSIPSYDGSPLRQAIEACAKQMPYLSSSGTSTPVSPRIESPPQSPMFRSLNRPHATSSINEMVASLRSLQLHKELGKVQSPSSLWNVQVGSPVFGSPGESSARSGFGSLPDTPTPPAVRYLDFWDLGCGEEQAMARVESGRDLRAKMLEKLRKENSVACGDQEKPGGGSVDVGWISELLK 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9983593 9984786 + CmaCh12G012840.1 Cma12g01284 305774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01284 397 MobiDBLite consensus disorder prediction 1 51 - -
Cma12g01284 397 SMART c3hfinal6 180 203 IPR000571 GO:0046872
Cma12g01284 397 SMART c3hfinal6 145 171 IPR000571 GO:0046872
Cma12g01284 397 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 170 IPR000571 GO:0046872
Cma12g01284 397 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 10 396 - -
Cma12g01284 397 MobiDBLite consensus disorder prediction 32 50 - -
Cma12g01284 397 PANTHER UNKEMPT FAMILY MEMBER 10 396 IPR045234 -
Cma12g01284 397 Gene3D - 145 208 - -
Cma12g01284 397 MobiDBLite consensus disorder prediction 243 262 - -
Cma12g01284 397 ProSiteProfiles Zinc finger C3H1-type profile. 145 172 IPR000571 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00671 Cma-Chr11:3249244 Cma12g01284 Cma-Chr12:9983593 2.08E-153 dispersed
Cma11g01912 Cma-Chr11:12641174 Cma12g01284 Cma-Chr12:9983593 9.09E-64 dispersed
Cma12g00622 Cma-Chr12:3290026 Cma12g01284 Cma-Chr12:9983593 7.27E-74 dispersed
Cma12g01284 Cma-Chr12:9983593 Cma19g00995 Cma-Chr19:8638814 1.53E-65 dispersed
Cma10g00690 Cma-Chr10:3123164 Cma12g01284 Cma-Chr12:9983593 2.51E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36055 PF00642 zf-CCCH 4.60E-05 CL0537 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01284 - - cmax:111465573 782.711