Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01318 ATGGATAGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTTGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACTGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTAGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAGTCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCGAAGGGTTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGCGACCTATGTGAGAAGTGGTTCCACGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA 759 48.22 MDRGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10095380 10098395 + CmaCh12G013180.1 Cma12g01318 305808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01318 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Cma12g01318 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Cma12g01318 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Cma12g01318 252 CDD PHD_AL_plant 198 248 IPR044104 -
Cma12g01318 252 Pfam PHD-finger 199 248 IPR019787 -
Cma12g01318 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cma12g01318 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Cma12g01318 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Cma12g01318 252 MobiDBLite consensus disorder prediction 147 168 - -
Cma12g01318 252 MobiDBLite consensus disorder prediction 145 192 - -
Cma12g01318 252 SMART PHD_3 198 246 IPR001965 -
Cma12g01318 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00788 Cma-Chr8:4745716 Cma12g01318 Cma-Chr12:10095380 6.14E-112 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma17g00700 Cma-Chr17:5789057 1.17E-120 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma05g01413 Cma-Chr5:10511813 7.69E-151 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36059 PF12165 Alfin 1.30E-69 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01318 - - jre:109009410 449.899