Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01318 ATGGATAGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTTGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACTGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTAGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAGTCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCGAAGGGTTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGCGACCTATGTGAGAAGTGGTTCCACGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA 759 48.22 MDRGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10095380 10098395 + CmaCh12G013180.1 Cma12g01318 305808

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01318 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Cma12g01318 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Cma12g01318 252 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 252 - -
Cma12g01318 252 CDD PHD_AL_plant 198 248 IPR044104 -
Cma12g01318 252 Pfam PHD-finger 199 248 IPR019787 -
Cma12g01318 252 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cma12g01318 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Cma12g01318 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Cma12g01318 252 MobiDBLite consensus disorder prediction 147 168 - -
Cma12g01318 252 MobiDBLite consensus disorder prediction 145 192 - -
Cma12g01318 252 SMART PHD_3 198 246 IPR001965 -
Cma12g01318 252 PANTHER CPG BINDING PROTEIN 3 252 IPR045104 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01318 - - - jre:109009410 449.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00788 Cma-Chr8:4745716 Cma12g01318 Cma-Chr12:10095380 6.14E-112 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma17g00700 Cma-Chr17:5789057 1.17E-120 dispersed
Cma12g01318 Cma-Chr12:10095380 Cma05g01413 Cma-Chr5:10511813 7.69E-151 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00752 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 1.3e-112 403.3
Cma04g00878 . 1 279 Alfin-like Transcription Factor Family AT1G14510 75.3 1.5e-108 389.8
Cma12g01318 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.4 4.2e-95 345.1
Cma08g00788 CST 677 912 Alfin-like Transcription Factor Family AT1G14510 68.8 5.1e-93 338.2
Cma05g00416 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 6.7e-93 337.8
Cma05g01413 . 448 687 Alfin-like Transcription Factor Family AT1G14510 69.3 1.5e-92 336.7
Cma17g00700 CST 711 949 Alfin-like Transcription Factor Family AT1G14510 67.2 2.0e-89 326.2
Cma12g00657 CCT,ECH 440 660 Alfin-like Transcription Factor Family AT1G14510 67.4 6.9e-82 301.2
Cma04g00152 CST,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 5.2e-77 285.0
Cma04g01114 CST,ECH 9 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.1e-76 283.9
Cma06g00227 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 58.2 2.6e-73 272.7
Cma14g00064 CST 340 540 Alfin-like Transcription Factor Family AT1G14510 58.8 5.5e-63 238.4
Cma12g01318 . 1 251 Alfin-like Transcription Factor Family AT5G26210 75.6 3.6e-110 395.2
Cma05g00416 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.6e-108 389.0
Cma05g01413 . 440 689 Alfin-like Transcription Factor Family AT5G26210 73.6 2.2e-107 386.0
Cma08g00788 CST 668 917 Alfin-like Transcription Factor Family AT5G26210 65.4 2.7e-97 352.4
Cma17g00700 CST 702 951 Alfin-like Transcription Factor Family AT5G26210 64.6 6.6e-96 347.8
Cma16g00752 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.4 1.4e-93 340.1
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT5G26210 76.0 3.4e-92 335.5
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT5G26210 66.4 1.0e-88 323.9
Cma04g00152 CST,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 5.0e-80 295.0
Cma04g01114 CST,ECH 9 240 Alfin-like Transcription Factor Family AT5G26210 58.4 7.3e-79 291.2
Cma06g00227 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 55.7 4.6e-73 271.9
Cma14g00064 CST 340 539 Alfin-like Transcription Factor Family AT5G26210 56.5 1.9e-63 240.0
Cma12g01318 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.8 6.6e-101 364.4
Cma05g01413 . 440 689 Alfin-like Transcription Factor Family AT3G42790 69.3 2.8e-99 359.0
Cma05g00416 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.8e-99 359.0
Cma08g00788 CST 668 917 Alfin-like Transcription Factor Family AT3G42790 64.1 1.4e-95 346.7
Cma17g00700 CST 702 951 Alfin-like Transcription Factor Family AT3G42790 62.5 2.3e-93 339.3
Cma16g00752 . 3 254 Alfin-like Transcription Factor Family AT3G42790 70.2 6.9e-90 327.8
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT3G42790 70.9 5.1e-85 311.6
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT3G42790 63.7 8.7e-85 310.8
Cma04g00152 CST,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.7e-80 296.6
Cma04g01114 CST,ECH 9 240 Alfin-like Transcription Factor Family AT3G42790 59.9 1.4e-79 293.5
Cma06g00227 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 56.7 1.8e-74 276.6
Cma14g00064 CST 340 540 Alfin-like Transcription Factor Family AT3G42790 56.0 3.6e-62 235.7
Cma04g01114 CST,ECH 1 241 Alfin-like Transcription Factor Family AT5G05610 77.3 3.1e-111 398.7
Cma04g00152 CST,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 7.5e-110 394.0
Cma06g00227 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 71.8 4.1e-100 361.7
Cma08g00788 CST 677 917 Alfin-like Transcription Factor Family AT5G05610 65.7 2.1e-91 332.8
Cma12g01318 . 8 251 Alfin-like Transcription Factor Family AT5G05610 64.5 3.0e-90 328.9
Cma05g01413 . 447 689 Alfin-like Transcription Factor Family AT5G05610 65.2 6.6e-90 327.8
Cma14g00064 CST 333 572 Alfin-like Transcription Factor Family AT5G05610 67.2 8.7e-90 327.4
Cma05g00416 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.5 2.1e-88 322.8
Cma17g00700 CST 711 951 Alfin-like Transcription Factor Family AT5G05610 63.6 6.2e-88 321.2
Cma16g00752 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.6 1.4e-84 310.1
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT5G05610 55.7 3.1e-79 292.4
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT5G05610 64.6 2.0e-78 289.7
Cma04g01114 CST,ECH 43 241 Alfin-like Transcription Factor Family AT3G11200 79.7 3.9e-95 345.1
Cma04g00152 CST,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 1.1e-92 337.0
Cma06g00227 CST 43 239 Alfin-like Transcription Factor Family AT3G11200 72.8 2.1e-80 296.2
Cma08g00788 CST 711 917 Alfin-like Transcription Factor Family AT3G11200 65.4 6.4e-74 274.6
Cma12g01318 . 44 251 Alfin-like Transcription Factor Family AT3G11200 63.4 8.4e-74 274.2
Cma05g01413 . 483 689 Alfin-like Transcription Factor Family AT3G11200 63.8 8.4e-74 274.2
Cma12g00657 CCT,ECH 454 662 Alfin-like Transcription Factor Family AT3G11200 63.6 1.6e-72 270.0
Cma17g00700 CST 745 951 Alfin-like Transcription Factor Family AT3G11200 63.8 6.0e-72 268.1
Cma05g00416 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.7 1.0e-71 267.3
Cma16g00752 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.6 3.3e-70 262.3
Cma04g00878 . 68 281 Alfin-like Transcription Factor Family AT3G11200 62.6 4.3e-70 261.9
Cma14g00064 CST 375 540 Alfin-like Transcription Factor Family AT3G11200 75.9 7.4e-70 261.2
Cma16g00752 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 7.5e-76 281.2
Cma04g00878 . 1 191 Alfin-like Transcription Factor Family AT2G02470 72.3 1.6e-73 273.5
Cma12g01318 . 9 158 Alfin-like Transcription Factor Family AT2G02470 78.7 2.7e-65 246.1
Cma05g01413 . 440 597 Alfin-like Transcription Factor Family AT2G02470 75.9 3.5e-65 245.7
Cma05g00416 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.3e-64 243.0
Cma17g00700 CST 711 861 Alfin-like Transcription Factor Family AT2G02470 76.8 1.6e-62 236.9
Cma08g00788 CST 677 825 Alfin-like Transcription Factor Family AT2G02470 76.5 3.6e-62 235.7
Cma14g00064 CST 340 499 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Cma06g00227 CST 8 174 Alfin-like Transcription Factor Family AT2G02470 62.1 1.8e-53 206.8
Cma12g00657 CCT,ECH 440 568 Alfin-like Transcription Factor Family AT2G02470 78.3 9.0e-53 204.5
Cma04g01114 CST,ECH 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 9.0e-53 204.5
Cma04g00152 CST,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 9.0e-53 204.5
Cma12g01318 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 1.4e-71 266.5
Cma05g00416 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 7.1e-71 264.2
Cma08g00788 CST 668 829 Alfin-like Transcription Factor Family AT5G20510 76.4 3.9e-69 258.5
Cma17g00700 CST 702 863 Alfin-like Transcription Factor Family AT5G20510 75.2 3.3e-68 255.4
Cma05g01413 . 440 603 Alfin-like Transcription Factor Family AT5G20510 72.1 4.8e-67 251.5
Cma16g00752 . 9 172 Alfin-like Transcription Factor Family AT5G20510 71.1 3.8e-64 241.9
Cma04g00878 . 3 199 Alfin-like Transcription Factor Family AT5G20510 59.8 5.6e-60 228.0
Cma12g00657 CCT,ECH 440 569 Alfin-like Transcription Factor Family AT5G20510 76.2 1.3e-56 216.9
Cma04g00152 CST,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.9e-53 205.3
Cma14g00064 CST 339 489 Alfin-like Transcription Factor Family AT5G20510 62.4 9.6e-52 200.7
Cma04g01114 CST,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.8e-51 198.4
Cma06g00227 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36059 PF12165 Alfin 1.30E-69 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g01318 Cma_Chr12 FPKM 6.844985 7.989161 9.593968 10.886529 25.002676 27.132215 26.916107 20.862942 20.390141 20.55254