Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01318 | ATGGATAGAGGAGCGGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCCGGAATGATTAGAGCTCTCACCACCGATGTTGAAGAATTTTATCAGCAGTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGGTTCCCTAATGAACTGTGGGAAGTTAATTTGCCTGCTGAGGAAGTACCTCCAGAGCTTCCGGAACCAGCATTGGGTATTAACTTTGCTAGAGATGGGATGCAAGAAAAGGATTGGCTGTCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTAGCTGTGGCTTTCTATTTTGGTGCTAGATTTGGCTTTGATAAGTCTGACAGGAAACGACTTTTTACAATGATAAATGATATGCCCACAATCTTTGAGGTCGTGACGGGAGGTGTGAAGAAACAGGGAAAAGACAAGTCGTTAGTTTCAAATAACAGCAGCAACAAATCCAAGACAGGCTCAAAAGGGCGAGGATCTGAGGCAAGCAAATTGTCGAAGGGTTTAGCAAAAGAAGAGGATGAGGGACTACTAGACGAGGAAGAGGAGGAGGAGCACGGGGAGACCTTATGCGGGGCGTGCGGGGAAAACTATGCATCGGACGAGTTCTGGATATGTTGCGACCTATGTGAGAAGTGGTTCCACGGGAAGTGTGTGAAGATCACTCCTGCAAGAGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGCGAGCACGGCCCTGA | 759 | 48.22 | MDRGAAYNPRTVEEVFRDFKGRRAGMIRALTTDVEEFYQQCDPEKENLCLYGFPNELWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKSDRKRLFTMINDMPTIFEVVTGGVKKQGKDKSLVSNNSSNKSKTGSKGRGSEASKLSKGLAKEEDEGLLDEEEEEEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP | 252 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10095380 | 10098395 | + | CmaCh12G013180.1 | Cma12g01318 | 305808 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01318 | 252 | SUPERFAMILY | FYVE/PHD zinc finger | 188 | 249 | IPR011011 | - | |
Cma12g01318 | 252 | ProSitePatterns | Zinc finger PHD-type signature. | 199 | 245 | IPR019786 | - | |
Cma12g01318 | 252 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 | 3 | 252 | - | - | |
Cma12g01318 | 252 | CDD | PHD_AL_plant | 198 | 248 | IPR044104 | - | |
Cma12g01318 | 252 | Pfam | PHD-finger | 199 | 248 | IPR019787 | - | |
Cma12g01318 | 252 | Pfam | Alfin | 11 | 139 | IPR021998 | GO:0006355|GO:0042393 | |
Cma12g01318 | 252 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 247 | IPR013083 | - | |
Cma12g01318 | 252 | ProSiteProfiles | Zinc finger PHD-type profile. | 196 | 248 | IPR019787 | - | |
Cma12g01318 | 252 | MobiDBLite | consensus disorder prediction | 147 | 168 | - | - | |
Cma12g01318 | 252 | MobiDBLite | consensus disorder prediction | 145 | 192 | - | - | |
Cma12g01318 | 252 | SMART | PHD_3 | 198 | 246 | IPR001965 | - | |
Cma12g01318 | 252 | PANTHER | CPG BINDING PROTEIN | 3 | 252 | IPR045104 | GO:0006355|GO:0042393 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma08g00788 | Cma-Chr8:4745716 | Cma12g01318 | Cma-Chr12:10095380 | 6.14E-112 | dispersed | |
Cma12g01318 | Cma-Chr12:10095380 | Cma17g00700 | Cma-Chr17:5789057 | 1.17E-120 | dispersed | |
Cma12g01318 | Cma-Chr12:10095380 | Cma05g01413 | Cma-Chr5:10511813 | 7.69E-151 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36059 | PF12165 | Alfin | 1.30E-69 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01318 | - | - | jre:109009410 | 449.899 |