Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01322 ATGGCGAGGGGCACAGACTCGGCTGGAACTTGGAAGGCTCCTGGAGCAAAACAACGCGGTGCGACCCTCCACCGGAGGAAACTAATAAGCCCGCCAATCATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTACCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAATAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCCTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTACGACAATGGTGCCATTTTCATAATCTTGGAATACATGGACGGTGGATCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCATAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTACTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAGGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAGCTAGCATCACCATCTGCACCTGAACAATTTTCCCCTGAGTTTTGCTCTTTCATTTCTTCATGCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAACGATGCTGGCTCTCCATTGGCAACCTTCTAA 1161 44.62 MARGTDSAGTWKAPGAKQRGATLHRRKLISPPIMKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSCLHKDPQQRSSARELLVHPFIKKFEHLDVDLAAYFNDAGSPLATF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10107708 10111892 + CmaCh12G013220.1 Cma12g01322 305812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01322 386 Gene3D Phosphorylase Kinase; domain 1 81 182 - -
Cma12g01322 386 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g01322 386 SUPERFAMILY Protein kinase-like (PK-like) 89 367 IPR011009 -
Cma12g01322 386 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Cma12g01322 386 CDD PKc_MAPKK_plant_like 101 366 - -
Cma12g01322 386 Coils Coil 138 158 - -
Cma12g01322 386 SMART serkin_6 103 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 Gene3D Transferase(Phosphotransferase) domain 1 183 381 - -
Cma12g01322 386 PANTHER MAP KINASE KINASE 38 385 - -
Cma12g01322 386 ProSiteProfiles Protein kinase domain profile. 103 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 Pfam Protein kinase domain 105 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cma12g01322 386 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 38 385 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01275 Cma-Chr12:9924976 Cma12g01322 Cma-Chr12:10107708 9.77E-144 dispersed
Cma12g01322 Cma-Chr12:10107708 Cma14g00668 Cma-Chr14:3361622 3.47E-74 dispersed
Cma01g00023 Cma-Chr1:99519 Cma12g01322 Cma-Chr12:10107708 2.57E-59 wgd
Cma10g00741 Cma-Chr10:3371796 Cma12g01322 Cma-Chr12:10107708 0 wgd
Cma11g00712 Cma-Chr11:3472591 Cma12g01322 Cma-Chr12:10107708 3.82E-174 wgd
Cma12g01322 Cma-Chr12:10107708 Cma14g01229 Cma-Chr14:9753485 3.72E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68988 PF00069 Pkinase 1.10E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01322 K20603 - csv:101206374 646.736