Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01322 ATGGCGAGGGGCACAGACTCGGCTGGAACTTGGAAGGCTCCTGGAGCAAAACAACGCGGTGCGACCCTCCACCGGAGGAAACTAATAAGCCCGCCAATCATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTACCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAATAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCCTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTACGACAATGGTGCCATTTTCATAATCTTGGAATACATGGACGGTGGATCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCATAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTACTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAGGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAGCTAGCATCACCATCTGCACCTGAACAATTTTCCCCTGAGTTTTGCTCTTTCATTTCTTCATGCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAACGATGCTGGCTCTCCATTGGCAACCTTCTAA 1161 44.62 MARGTDSAGTWKAPGAKQRGATLHRRKLISPPIMKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSCLHKDPQQRSSARELLVHPFIKKFEHLDVDLAAYFNDAGSPLATF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10107708 10111892 + CmaCh12G013220.1 Cma12g01322 305812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01322 386 Gene3D Phosphorylase Kinase; domain 1 81 182 - -
Cma12g01322 386 MobiDBLite consensus disorder prediction 1 25 - -
Cma12g01322 386 SUPERFAMILY Protein kinase-like (PK-like) 89 367 IPR011009 -
Cma12g01322 386 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Cma12g01322 386 CDD PKc_MAPKK_plant_like 101 366 - -
Cma12g01322 386 Coils Coil 138 158 - -
Cma12g01322 386 SMART serkin_6 103 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 Gene3D Transferase(Phosphotransferase) domain 1 183 381 - -
Cma12g01322 386 PANTHER MAP KINASE KINASE 38 385 - -
Cma12g01322 386 ProSiteProfiles Protein kinase domain profile. 103 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 Pfam Protein kinase domain 105 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01322 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672|GO:0006468
Cma12g01322 386 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 38 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01322 K20603 MKK2; mitogen-activated protein kinase kinase 2 [EC:2.7.12.2] - csv:101206374 646.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01275 Cma-Chr12:9924976 Cma12g01322 Cma-Chr12:10107708 9.77E-144 dispersed
Cma12g01322 Cma-Chr12:10107708 Cma14g00668 Cma-Chr14:3361622 3.47E-74 dispersed
Cma01g00023 Cma-Chr1:99519 Cma12g01322 Cma-Chr12:10107708 2.57E-59 wgd
Cma10g00741 Cma-Chr10:3371796 Cma12g01322 Cma-Chr12:10107708 0 wgd
Cma11g00712 Cma-Chr11:3472591 Cma12g01322 Cma-Chr12:10107708 3.82E-174 wgd
Cma12g01322 Cma-Chr12:10107708 Cma14g01229 Cma-Chr14:9753485 3.72E-60 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma10g00741 CST 28 353 MAP Kinase Kinase Gene Family AT4G26070 70.5 1.5e-135 479.9
Cma12g01322 . 60 384 MAP Kinase Kinase Gene Family AT4G26070 67.8 2.5e-127 452.6
Cma11g00712 CST 28 326 MAP Kinase Kinase Gene Family AT4G26070 69.2 2.1e-121 433.0
Cma12g01275 CST 26 346 MAP Kinase Kinase Gene Family AT4G26070 55.0 6.7e-104 374.8
Cma05g01373 CST 136 427 MAP Kinase Kinase Gene Family AT4G26070 57.3 6.9e-101 364.8
Cma10g00741 CST 1 326 MAP Kinase Kinase Gene Family AT4G29810 69.6 4.7e-134 474.9
Cma11g00712 CST 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.0 2.4e-130 462.6
Cma12g01322 . 34 358 MAP Kinase Kinase Gene Family AT4G29810 63.1 9.9e-116 414.1
Cma12g01275 CST 10 321 MAP Kinase Kinase Gene Family AT4G29810 59.1 2.2e-107 386.3
Cma05g01373 CST 128 400 MAP Kinase Kinase Gene Family AT4G29810 61.9 1.2e-100 364.0
Cma14g00668 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.9 1.2e-229 793.1
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT1G51660 67.7 3.7e-132 468.8
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT1G51660 70.0 3.2e-128 455.7
Cma13g00976 . 48 317 MAP Kinase Kinase Gene Family AT1G51660 54.8 1.6e-82 303.9
Cma18g00086 . 31 306 MAP Kinase Kinase Gene Family AT1G51660 54.7 7.7e-82 301.6
Cma14g01229 . 1 365 MAP Kinase Kinase Gene Family AT3G21220 64.5 6.1e-129 458.0
Cma01g00023 . 1 371 MAP Kinase Kinase Gene Family AT3G21220 68.5 1.0e-128 457.2
Cma13g00976 . 48 313 MAP Kinase Kinase Gene Family AT3G21220 54.9 1.0e-83 307.8
Cma18g00086 . 35 304 MAP Kinase Kinase Gene Family AT3G21220 55.2 2.5e-82 303.1
Cma12g01275 CST 1 346 MAP Kinase Kinase Gene Family AT5G56580 82.9 1.6e-164 576.2
Cma05g01373 CST 131 430 MAP Kinase Kinase Gene Family AT5G56580 84.7 3.9e-147 518.5
Cma10g00741 CST 7 352 MAP Kinase Kinase Gene Family AT5G56580 59.1 1.3e-118 423.7
Cma11g00712 CST 7 328 MAP Kinase Kinase Gene Family AT5G56580 58.5 2.5e-109 392.9
Cma12g01322 . 34 383 MAP Kinase Kinase Gene Family AT5G56580 55.1 2.3e-107 386.3
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G18350 62.8 2.6e-107 386.0
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G18350 64.0 2.4e-105 379.4
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G18350 52.8 3.1e-76 282.7
Cma13g00976 . 1 299 MAP Kinase Kinase Gene Family AT3G06230 50.5 2.2e-79 293.1
Cma18g00086 . 1 290 MAP Kinase Kinase Gene Family AT3G06230 50.2 2.3e-76 283.1
Cma13g00976 . 1 311 MAP Kinase Kinase Gene Family AT1G73500 66.3 1.4e-113 406.8
Cma18g00086 . 1 302 MAP Kinase Kinase Gene Family AT1G73500 65.5 1.7e-109 393.3
Cma01g00023 . 79 338 MAP Kinase Kinase Gene Family AT1G73500 52.8 1.7e-77 287.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001594 2 3 1 2 2 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 9 2 1 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68988 PF00069 Pkinase 1.10E-69 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma12g01322 Cma_Chr12 FPKM 5.807063 6.240581 13.962648 11.448719 20.102478 20.543798 24.958393 9.534112 8.525982 8.837212