Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma12g01322 | ATGGCGAGGGGCACAGACTCGGCTGGAACTTGGAAGGCTCCTGGAGCAAAACAACGCGGTGCGACCCTCCACCGGAGGAAACTAATAAGCCCGCCAATCATGAAGAAGGACAGCTCCATGAATCCTAACTTGAAGCTCCATCTACCTCCTCCCGAGGAAGTTTCCTTCGCCTTCATAACCCGAGGCGGTACTTTCATAGATGGCGATTTGCTTGTGAATAGAGACGGCGTGCGGATCGTTTCTCAAGCGGAAGACGAAAGTCCTCCACCAATAAAGCCCTCAGACAACCATTTGTCCTTAGCAGATTTAGATTCAATAAAAGTCATTGGGAAAGGAAACGGTGGAGTAGTTCAATTAGTCCGACATAAATGGACGAATCAGTTTTTTGCTCTAAAGGTGATTCAGATGAATGCTGAGGAATCTCGTTGTAGGCTGGTTGCTCAGGAACTAAAAATCAATCAATTGGCACAAAACCCTTACATCGTCGTCTGTTACCAGATCTTCTACGACAATGGTGCCATTTTCATAATCTTGGAATACATGGACGGTGGATCACTTGCAGATCTTCTAAAAAAAGTTGGAACAATCCTAGAGCCGTATCTTGCAGCCATTTGTTACCAGGTCCTCAAGGGGTTAATATACCTTCACCATGAAGAACATGTCATCCATAGAGACCTTAAGCCTTCTAATTTGTTGATAAATCATAGAGGGGAAGTTAAGATTACTGACTTTGGTGTTAGTGCTATACTGGCGAGTACGTCTGATCTGGCACATTCTTTCGTTGGCACTTACACTTTCATGTCTCCGGAGAGAATCAGTGGGGGCAAATATGACAACAAAAGTGACATATGGAGTTTGGGATTGGTTTTACTTGAATGTGCAACGGGTCAATTTCCATATACTCCACCAGATAAGGATAAAGGGTGGGAGGGCTTTTTTGATGTAATGCTAGCTGTAGTCGAGCTAGCATCACCATCTGCACCTGAACAATTTTCCCCTGAGTTTTGCTCTTTCATTTCTTCATGCTTACACAAAGATCCGCAGCAGAGAAGCTCTGCACGCGAACTTCTGGTGCATCCTTTCATCAAAAAGTTTGAACACTTGGACGTTGATCTTGCAGCTTACTTCAACGATGCTGGCTCTCCATTGGCAACCTTCTAA | 1161 | 44.62 | MARGTDSAGTWKAPGAKQRGATLHRRKLISPPIMKKDSSMNPNLKLHLPPPEEVSFAFITRGGTFIDGDLLVNRDGVRIVSQAEDESPPPIKPSDNHLSLADLDSIKVIGKGNGGVVQLVRHKWTNQFFALKVIQMNAEESRCRLVAQELKINQLAQNPYIVVCYQIFYDNGAIFIILEYMDGGSLADLLKKVGTILEPYLAAICYQVLKGLIYLHHEEHVIHRDLKPSNLLINHRGEVKITDFGVSAILASTSDLAHSFVGTYTFMSPERISGGKYDNKSDIWSLGLVLLECATGQFPYTPPDKDKGWEGFFDVMLAVVELASPSAPEQFSPEFCSFISSCLHKDPQQRSSARELLVHPFIKKFEHLDVDLAAYFNDAGSPLATF | 386 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10107708 | 10111892 | + | CmaCh12G013220.1 | Cma12g01322 | 305812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma12g01322 | 386 | Gene3D | Phosphorylase Kinase; domain 1 | 81 | 182 | - | - | |
Cma12g01322 | 386 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma12g01322 | 386 | SUPERFAMILY | Protein kinase-like (PK-like) | 89 | 367 | IPR011009 | - | |
Cma12g01322 | 386 | ProSitePatterns | Protein kinases ATP-binding region signature. | 109 | 132 | IPR017441 | GO:0005524 | |
Cma12g01322 | 386 | CDD | PKc_MAPKK_plant_like | 101 | 366 | - | - | |
Cma12g01322 | 386 | Coils | Coil | 138 | 158 | - | - | |
Cma12g01322 | 386 | SMART | serkin_6 | 103 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01322 | 386 | Gene3D | Transferase(Phosphotransferase) domain 1 | 183 | 381 | - | - | |
Cma12g01322 | 386 | PANTHER | MAP KINASE KINASE | 38 | 385 | - | - | |
Cma12g01322 | 386 | ProSiteProfiles | Protein kinase domain profile. | 103 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01322 | 386 | Pfam | Protein kinase domain | 105 | 362 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma12g01322 | 386 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 221 | 233 | IPR008271 | GO:0004672|GO:0006468 | |
Cma12g01322 | 386 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 38 | 385 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01275 | Cma-Chr12:9924976 | Cma12g01322 | Cma-Chr12:10107708 | 9.77E-144 | dispersed | |
Cma12g01322 | Cma-Chr12:10107708 | Cma14g00668 | Cma-Chr14:3361622 | 3.47E-74 | dispersed | |
Cma01g00023 | Cma-Chr1:99519 | Cma12g01322 | Cma-Chr12:10107708 | 2.57E-59 | wgd | |
Cma10g00741 | Cma-Chr10:3371796 | Cma12g01322 | Cma-Chr12:10107708 | 0 | wgd | |
Cma11g00712 | Cma-Chr11:3472591 | Cma12g01322 | Cma-Chr12:10107708 | 3.82E-174 | wgd | |
Cma12g01322 | Cma-Chr12:10107708 | Cma14g01229 | Cma-Chr14:9753485 | 3.72E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68988 | PF00069 | Pkinase | 1.10E-69 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma12g01322 | K20603 | - | csv:101206374 | 646.736 |