Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01333 ATGGCCGCTGTTCGAAATGTGTTCCTCTTCCTCACCATCTTCCTCGTCGGCGGTCCACCTCTTTCCTGTTCCCTCTCCGATAACGAGGCCCTCCTGAAGCTCAGGCAATCCTTCACCCATGCCGAATCCCTTAATTCCTGGGACCCGGACTCCCAACCCTGCGCCGCTCGATGGACTGGCATCATCTGCCACAGAGGCGTCATCACCGGTCTCCATCTCACCGGCCTCCGACTCTCCGGCCAGATCGACATCGAAGCTCTCCTCCAGCTTCGCAGCCTTCGAACCGTCAGCCTCGTCAACAACAGCTTCGCCGGGCCGATTCCCGAGTTCAACAAAATCGGCGTTCTCAAATCCCTCCTTCTCACAGGGAATGATTTCTCCGGGGCTATTCCTACCGATTTCTTCGCATCCCTCGCCTCTCTCAAGAAGGTTTGGCTCTCTTCCAACAATTTCTCCGGCGACATTCCGCACTCTCTGGCGAAACTCTCGTATCTAATCGAACTCCATCTCGAAAACAACCAATTCTCCGGCCAAATCCCTCACCTACACCAGGCCGCCTTAACCTCTCTAGATCTCTCCAATAACAAGCTGGAGGGAGAAATTCCAGAGAATCTAGCGAAGTTCGACGCGAACGCATTTGCCGGAAACGAAGGTCTGTGTGGGAAGCCGCTCCCGAAATCATGCGACGGCAATAACGCGCAGATTTCGGAGGAAAACGCGTCTTCTCCGGGGGAATCACAAGGCAGCGTCTCGAAATTAGTAGTGGCGTCGTTGATAGCGGTGGCTGTATTTCTGGTGGTGGTTATGTTTCTGAGCGCGTCGAAGCGGAGAGAGGAGAAGTTCAGCAAGCTAGGGCGGGAGCAGATGAATGAGATGGTGGAGGTGCACGTGCCGAGTTCCGGGCATAGGGAGCAGCTGAGTAGAAAAGGTGGGGATTCCAGGAGAGGGTCGCAACAGGGGAAGGGAGGGATGAGTGATCTTGTGGTAGTGAATGAAGAAAAGGGTACGTTTGGGATGGCGGATTTGATGAAGGCGGCGGCGGAGGTGCTGGGGAATGGTGGGTTGGGGTCGGCTTACAAGGCCGTCATGGCAAATGGGCTGTCGGTGGTGGTGAAAAGAATCAGAGAAATGAACAAATTAGGGAAGGATGGGTTCGATGCAGAGATGAGGCGCATGGGACGGCTGCAGCATCACAATATTCTCACGCCTTTGGCGTACCATTACAGGCGGGAGGAGAAGCTGCTGGTGTCCGAGTACATTCCTAAAGGCAGCCTCTTGTATGTGTTGCATGGGGACCGTGGAGCCTGCCATGCGGAGCTTAACTGGGGCACCCGGTTAAAGATCGTGAAGGGGATCGCCAGAGGCCTAGGGTTTCTCCATTCCGAGTTCGCGACCTACGATCTGCCGCATGGGAATCTGAAATCAAGCAACATTCTTCTAAGCGACACCTACGAGCCACTTCTCAGCGACTACGCGTTTCATCCGCTAATCAATCCAAACAACGCGACGGAGGCAATGTTTGCGTACAAATCCCCGGAGTACGCGCATCGGCAGGAAGTTTCTCCAAAATCTGATGTTTATTGCCTTGGAATTATCATTCTAGAAATTCTGACCGGCAAATTTCCTTCTCAATATCTTAGCAATGGCAAGGGAGGGACCGATGTGGTGCAGTGGGTCTCCTCCGCAGTAGCCGAGAAGAGGGAGGCGGAACTCATAGACCCTGAGATAGCAAACGACGCGAATGCAGTGAGTCGGATGGTCGAGCTCCTTAGAATCGGCGCCGATTGCACCCAATCCAATCCTCAGCAACGGCCAGAAATGAAGGAAGCCATTAGGAGAATAGANGAAATATGA 1854 53.78 MAAVRNVFLFLTIFLVGGPPLSCSLSDNEALLKLRQSFTHAESLNSWDPDSQPCAARWTGIICHRGVITGLHLTGLRLSGQIDIEALLQLRSLRTVSLVNNSFAGPIPEFNKIGVLKSLLLTGNDFSGAIPTDFFASLASLKKVWLSSNNFSGDIPHSLAKLSYLIELHLENNQFSGQIPHLHQAALTSLDLSNNKLEGEIPENLAKFDANAFAGNEGLCGKPLPKSCDGNNAQISEENASSPGESQGSVSKLVVASLIAVAVFLVVVMFLSASKRREEKFSKLGREQMNEMVEVHVPSSGHREQLSRKGGDSRRGSQQGKGGMSDLVVVNEEKGTFGMADLMKAAAEVLGNGGLGSAYKAVMANGLSVVVKRIREMNKLGKDGFDAEMRRMGRLQHHNILTPLAYHYRREEKLLVSEYIPKGSLLYVLHGDRGACHAELNWGTRLKIVKGIARGLGFLHSEFATYDLPHGNLKSSNILLSDTYEPLLSDYAFHPLINPNNATEAMFAYKSPEYAHRQEVSPKSDVYCLGIIILEILTGKFPSQYLSNGKGGTDVVQWVSSAVAEKREAELIDPEIANDANAVSRMVELLRIGADCTQSNPQQRPEMKEAIRRIXEI 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10144846 10147301 - CmaCh12G013330.1 Cma12g01333 305823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01333 617 MobiDBLite consensus disorder prediction 229 247 - -
Cma12g01333 617 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Cma12g01333 617 MobiDBLite consensus disorder prediction 294 325 - -
Cma12g01333 617 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Cma12g01333 617 MobiDBLite consensus disorder prediction 225 247 - -
Cma12g01333 617 Gene3D Ribonuclease Inhibitor 185 232 IPR032675 -
Cma12g01333 617 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cma12g01333 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 617 - -
Cma12g01333 617 Gene3D Transferase(Phosphotransferase) domain 1 420 617 - -
Cma12g01333 617 CDD STKc_IRAK 350 617 - -
Cma12g01333 617 Pfam Protein kinase domain 348 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01333 617 MobiDBLite consensus disorder prediction 297 315 - -
Cma12g01333 617 Pfam Leucine rich repeat 116 175 IPR001611 GO:0005515
Cma12g01333 617 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 4 617 - -
Cma12g01333 617 SUPERFAMILY Protein kinase-like (PK-like) 348 613 IPR011009 -
Cma12g01333 617 ProSiteProfiles Protein kinase domain profile. 344 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma12g01333 617 SUPERFAMILY L domain-like 22 207 - -
Cma12g01333 617 Pfam Leucine Rich Repeat 187 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01333 Cma-Chr12:10144846 Cma14g01180 Cma-Chr14:9442176 1.00E-147 dispersed
Cma01g00001 Cma-Chr1:1425 Cma12g01333 Cma-Chr12:10144846 1.11E-153 wgd
Cma12g01333 Cma-Chr12:10144846 Cma05g01436 Cma-Chr5:10603396 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68989 PF00069 Pkinase 2.30E-28 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01333 - - cmo:103498999 988.408