Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma12g01336 ATGATCAAGGGTCAAGTTTTAGTGAATGAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCGTAGTGCGGGGTGGCCCAGCAGTCATGTCGAGGGCGGAGAGCGCAAGGCCACGCCCACGCCCACGCCCACGCCCACGCCCACGCCCAGCACTCACTGTGCAAGCGGCGTTGTCAAAAGTTCCAACTCCCTTGCATTATTCATCTTATCAATCATTCCCTTTCTTTTATTTGTGGACTTTATCTTCGGCCTTCGATTTCCCGGAGTCAAGTCTGTGTCATCACCACCTTCATCCCCTCGACAGTTTTGCTATTCACTTTTTTTTCTCTTTTTTCTTCACAACCCAAACTGGATCACTATATTCCCTTTGGGGTTCCGCCGCTCTACCTCGCCTTCTTCGCTTCTTTTTCTTCAGCGAACCCTGTTGTTGTTTCCAGAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTCACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATCCTACAGTATGAAAGCTCCCCCAAATGGGTTTGTGCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGTTACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAATAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCTTCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACATGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATACGAAAAAGAAGCTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTTGTGGCTAGAGATTTGCATGATAATTCATGGACATTCAGGCATATTTACCGTGGCCAACCAAAACGACACCTTCTGACCACTGGGTGGAGTGTTTTTGTTAGCACAAAACGAGTATTCGCCGGAGACTCGGTGCTGTTTATAAGAGATGAAAAGTCACAGCTTCTTTTAGGCATAAGGCACGCTAACAGGCAGCAGCCCGCTCTGTCTTCGTCGGTCATATCAAGTGATAGCATGCACATAGGGATTCTTGCTTCTGCTGCTCATGCTGCTGCAAATAACAGTCCTTTTACTATATTTTACAACCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATACGAAAGCAATGTACACGCAAGTTTCGCTTGGCATGCGATTTAGGATGATGTTTGAAACTGAGGAGTCGGGAGTACGCAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCGGCAGCTGGTGAACGACCGAACCGAGTTTCTATATGGGAAGTTGAGCCGGTTGTGACCCCCTTCTATATATGTCCACCTCCATTTTTCAGACCCAAATTCCCTAAACAACCAGGGATGCCAGATGATGAATCTGATATTGAAAATGCTTTCAAGAGAGCCATGCCGTGGTTTGGTGACGACTTCGGCATGAAAGATACACCAAGCTCGATCTTCCCAGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTTTAGCCAATGATGACCCGTCTAAATTATTGTGTTTTCAAGCTCCAGTAATGTCATCATCAAATCTCCAATTCAGCAAGGAAAATCAACAGAACCAAGTTGGCCAGTTGCCAGCAACGTCATGGTCTCAACAGCAGCAGCTGCAGCAGTTGCCACCCCAGCAGGAACTACGACAGCAGCAGCAGCAGCCGAAGCAGTCACAACAACAACAGACCTCCCAATCCGCTCTTCCGAACAATGGCGTTGGTGGTGCAAACCATTTGTCAAATCAGAGTTTGCAACAACCACTTGTATACTCTCAGCTACAGCAACAGCAACAGCAATTGCTTGCGGGAAATGTACAATCACATCAAACTAGCCAACCATCCAATAAAAACTCGATTGAGACGACATCTTTATTGCAGGAAACACAGTTTCAGCCACAAATAGATCAGCAGCCTAGCCTTGTTTCGAAACACCATCAGCAGACACAATTTCAACAGGCCCCACTACAATTATTGCAACAAAGTCTGTCTCAAAGAACACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAATAATCCCATCAGAGCAACAACTTCAATGGCAGCTGCTACAGAAGCTGCAACAACAGCAACAGCAGCAACCGTTGGTCTCCCCAGCTAGCCCGCTATTTCCACCTCAAATGATACAGCCGCATCCTATGCATCAGCAAAACCAGCCGTTACCACCCTTGCCTTTGTCCAATCAGCCACAGTTCAACACTAGTGGAGGCAGCTTCCAAACAGAAAAACATAACAGCAATGGCTTCTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGTTCCTATAACCCAATCCCATAACCAATTCAAACCAACCACGGCAATTAGGGGATATTCTGGACTGACTGATGGTGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGTATCAAACCTGCTCAATAAGAATCAACAAGGAGCAGCCACACTGGGGGGAGATTTGGTAGTTGAGCCTGCAACTAACCTGCCTCAGGAGCTGCCAAGCAAACCTGATTTGCGGAACAAACCCAAGTTTCCTAACTCAAAAGGATTGGACCAACTGAAATACAGAAGCACCGTTCCCGATCAGTTAGAAGCATCTTCTTCTGGAACATCATATTGTCTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAACGATGTCCAATCACACCCACAAACCAACATCCCCTTCAGTAATAGCATTGATGGATGGGCTCCAGATACCTTATTGTCGAGGGGATATGACTCTCAAAAAGATCTTCAGAACTTACTTTCAAACTACGAGGGGGGTGTGCCAAGAGATATTGAGACAGAGTTGTCCACTGCTGCAATCCGCTCTCAGTCATTTGGGGTTCCAAACTTGCCCTTCAAGCCTGGCTGCTCGAATGATGTCAACGTCAATGAAGCTGGAGCCTTAAGTAGTGGATTGTGGGCAAATCACAGTCAACGAATGCGGACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGATGCATTGATGTCACTCGTTACAAAGGATATGACGAGCTTAGGCATGATCTTGCCCGAATGTTTGGTATTGAAGGGCAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCATGAAAATGATATACTTCTAGTTGGCGATGATCCTTGGGAGGAGTTTGTGAGCTGTGTTCAGAGCATAAAGATCCTATCATCTTCTGAAGTACAGCAGATGAGTTTAAATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGCGGGACGGATAGTGGAAACGCATGGAGAGGGCAGTATGACGACAACTCGGCTGCCTCATTCAATTGA 3774 46.13 MIKGQVLVNEIRDENRKWFVEHSVVRGGPAVMSRAESARPRPRPRPRPRPRPALTVQAALSKVPTPLHYSSYQSFPFFYLWTLSSAFDFPESSLCHHHLHPLDSFAIHFFFSFFFTTQTGSLYSLWGSAALPRLLRFFFFSEPCCCFQRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILHADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRVFAGDSVLFIRDEKSQLLLGIRHANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYTKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESDIENAFKRAMPWFGDDFGMKDTPSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLANDDPSKLLCFQAPVMSSSNLQFSKENQQNQVGQLPATSWSQQQQLQQLPPQQELRQQQQQPKQSQQQQTSQSALPNNGVGGANHLSNQSLQQPLVYSQLQQQQQQLLAGNVQSHQTSQPSNKNSIETTSLLQETQFQPQIDQQPSLVSKHHQQTQFQQAPLQLLQQSLSQRTQQQPQVQQFSQPIIPSEQQLQWQLLQKLQQQQQQQPLVSPASPLFPPQMIQPHPMHQQNQPLPPLPLSNQPQFNTSGGSFQTEKHNSNGFSSLGLMQSQQVPITQSHNQFKPTTAIRGYSGLTDGDAPSCSTSPSTNNCQVSVSNLLNKNQQGAATLGGDLVVEPATNLPQELPSKPDLRNKPKFPNSKGLDQLKYRSTVPDQLEASSSGTSYCLDAGTIQQTFPLPTCLDNDVQSHPQTNIPFSNSIDGWAPDTLLSRGYDSQKDLQNLLSNYEGGVPRDIETELSTAAIRSQSFGVPNLPFKPGCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSSEVQQMSLNGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFN 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10158039 10165572 - CmaCh12G013360.1 Cma12g01336 305826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma12g01336 1257 MobiDBLite consensus disorder prediction 653 712 - -
Cma12g01336 1257 Pfam Auxin response factor 429 511 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma12g01336 1257 ProSiteProfiles B3 DNA-binding domain profile. 303 405 IPR003340 GO:0003677
Cma12g01336 1257 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 178 1245 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma12g01336 1257 SUPERFAMILY CAD & PB1 domains 1144 1209 - -
Cma12g01336 1257 MobiDBLite consensus disorder prediction 31 51 - -
Cma12g01336 1257 Pfam AUX/IAA family 1128 1218 IPR033389 -
Cma12g01336 1257 Pfam B3 DNA binding domain 303 403 IPR003340 GO:0003677
Cma12g01336 1257 SMART B3_2 303 405 IPR003340 GO:0003677
Cma12g01336 1257 CDD B3_DNA 302 402 IPR003340 GO:0003677
Cma12g01336 1257 Gene3D - 1126 1220 - -
Cma12g01336 1257 MobiDBLite consensus disorder prediction 967 993 - -
Cma12g01336 1257 Gene3D - 301 404 IPR015300 -
Cma12g01336 1257 Gene3D - 466 537 - -
Cma12g01336 1257 ProSiteProfiles PB1 domain profile. 1131 1218 IPR000270 GO:0005515
Cma12g01336 1257 SUPERFAMILY DNA-binding pseudobarrel domain 293 432 IPR015300 -
Cma12g01336 1257 PANTHER AUXIN RESPONSE FACTOR 19 178 1245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01434 Cma-Chr5:10586898 Cma12g01336 Cma-Chr12:10158039 0 dispersed
Cma12g00930 Cma-Chr12:7210503 Cma12g01336 Cma-Chr12:10158039 0 dispersed
Cma12g01336 Cma-Chr12:10158039 Cma13g00511 Cma-Chr13:5418480 0 dispersed
Cma12g01336 Cma-Chr12:10158039 Cma05g00728 Cma-Chr5:4096173 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36060 PF02309 AUX_IAA 4.80E-10 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma12g01336 - K14486 csv:101210917 1686.0