Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00009 ATGTGTCGATCACAGGAGTGGGCATATGTAGCCCTTCTCCTCCTGTGCTTCTCGTCGTCCATACTGCTTGTCGGTGCCGCAGAGCCGGTTACCCACCCCTCTGAAGTGGACGCTTTGCGAGGCATCAAGAGAAGTTTGTTCGATCCTAATGGGAATCTGAGCAACTGGAACAGAGGAGATCCTTGTATTTCAAACTGGACTGGTGTTCTGTGCGACAATACCACATTGGATGATAACTATCGGCATGTTACTGAATTGCAACTTCTAAATATGAGCTTATCGGGAAATTTGTCCCCTGCGCTTGGCCGTTTATCTTACCTGAAAGTTTTGGACTTCATGTGGAATGAGATCAATGGGGAAATACCAGGAGAGATAGGCAATCTTACGTCCTTAGAACTGTTGCTTCTGAACGGGAACCAGTTGTCAGGTTCATTGCCTGAAGAGCTTGGAAATCTTCTACGTTTAGACAGAATACAGATTGACCAGAACCATATATCAGGACCCATACCTAAGTCATTTGCAAACTTAAAAGCAGCAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTAGATTGCCCAATCTTGTCCACTTCCTTCTTGACAATAACAACTTATCGGGGAAGCTTCCACCTGAGTTGTTTCAATTGCCCAACTTAGAAATACTTCAACTTGACAATAACAACTTCAGTGGGTCCACAATACCAGGCTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGACCAATTCCTGATCTGAGCAGAATAAATAGCCTCGGTTATCTAGATCTAAGTTCCAATCAACTTAGTGGATTCCTACCACAAAATAAACTCTCTGAGAATATCACAACCATCATCTTATCCAACAACCATCTTTCTGGCACCATACCATCCAGCTTTTTGAATCTACCGCATCTTCAGAAATTGTCAATTGCAAATAATTCATTGAACGGCTCTGTTCCATCTACCATATGGCAAAGCAGGACGCTCAATTCTCTGGACAGCCTTACAGTAGAGCTGCAGAACAACAATTTTTCAAATATTTTGGGAAGCATTGATCTCCCTCTGAATGTCTCTGTCTGGCTTCATGGAAATCCTGTTTGTTCTAACAAAAGCCTGCTGGACTTTTGTGGATCTGAGAGTGGGGATATAATTGACATTCCAACAAATAACACTCTTGGCTGTTCTGGCCCAATATGCCCACCTTCTTACGAATGTTACTCAGCAAAATGTCCCTCATCTTGTTTCTGTTCTGCACCTCTTATAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACAGATGTTTGAGGAGTACCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAGTCTGAAGCTTTTCCCTCTATATATTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGTGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGAAAGCGATATATTTGGACCGTATGAACTTCTCAGCTTGACAATATCTGACGTTTATAAAAAGGTATTTCTCACACCATCATCTGATTCTACTTTGAGTAAGGGGGCATTGGCTGGAATAATTTTAGGAGCAATTGCTGGCGGAACAATGCTATCTGCAATTGTTTTCATTTTTATTATAAGATCACGCGTGAGGGGCCACCACATCTTAAGAAAGCATCATCTGTCAAAAGCCTCCTTAAAGATTGAGGGCGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAGCAATTTTCATGATTCTACGGTAGTTGGTCAAGGTGGTTACGGAAAGGTTTACAGAGGCATTCTATCAGATAACACAGCTGTTGCAATCAAACGTGCACAGGAAGGCTCACTACAGGGTGAAAAAGAGTTCCTTACTGAAATACAGTTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGCTTGGATATTGCGATGAAGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCCAATGGCACGCTGAGGGATCACCTTTCTGTAAATTCTGCAGAACCTTTGAGCTTTGCCACAAGATTAAAAGCTGCCCTGGGTGCAGCTAAGGGAATTCTGTACCTGCATACAGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAGTATATAGCAAAGGTTGCTGATTTTGGACTTTCACGGCTTGCACCTCCTCCAGACGCAGAGGGCAACGTGCCTGCTCATGTATCGACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTCTTGACTCATAAATTGACCGATAAGAGCGATGTTTATAGTCTTGGTGTGGTATTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATTGTTAGGGAGGTTAAAGTTGCATATGAGTCGGGAAAATTTTTCTCAATAATTGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTGGAAAGATTTGTGACATTGGCTTTGAAGTGTTGCCAAGACGATACAGATGCACGTCCTTCAATGGCAGAGGTTGTTCGTACACTTGAAAGTATTTGGCTTATGTTGCCGGAGTCTGATGTGAAAATTGCAGAGCCTTTAATCTCCGATGTTATAAAAGTGAGCAGTACCCCATCTTCATCAACCAACATGAATAACTATTACATGTCAGAGGTTTCTGGTAGTGACCTTGTAAGTGGAATAACTCCCACTATCACGCCCAGATAG 2859 42.15 MCRSQEWAYVALLLLCFSSSILLVGAAEPVTHPSEVDALRGIKRSLFDPNGNLSNWNRGDPCISNWTGVLCDNTTLDDNYRHVTELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPGEIGNLTSLELLLLNGNQLSGSLPEELGNLLRLDRIQIDQNHISGPIPKSFANLKAAKHFHMNNNSISGEIPSELSRLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGSTIPGSYGNMTKLLKLSLRNCTLQGPIPDLSRINSLGYLDLSSNQLSGFLPQNKLSENITTIILSNNHLSGTIPSSFLNLPHLQKLSIANNSLNGSVPSTIWQSRTLNSLDSLTVELQNNNFSNILGSIDLPLNVSVWLHGNPVCSNKSLLDFCGSESGDIIDIPTNNTLGCSGPICPPSYECYSAKCPSSCFCSAPLIIGYRLKSPGFSRFSPYQQMFEEYLTSGLKVHLEQLDIGSPVWEKGPRLRMSLKLFPLYIADSNSSHMFNDSEVLRIVSKFTNWKIQESDIFGPYELLSLTISDVYKKVFLTPSSDSTLSKGALAGIILGAIAGGTMLSAIVFIFIIRSRVRGHHILRKHHLSKASLKIEGVKEFGYREMALATSNFHDSTVVGQGGYGKVYRGILSDNTAVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALLGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYIAKVADFGLSRLAPPPDAEGNVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVKVAYESGKFFSIIDGRLGSYPAECVERFVTLALKCCQDDTDARPSMAEVVRTLESIWLMLPESDVKIAEPLISDVIKVSSTPSSSTNMNNYYMSEVSGSDLVSGITPTITPR 952
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 181558 194961 - CmaCh13G000090.1 Cma13g00009 305836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00009 952 Gene3D Phosphorylase Kinase; domain 1 595 699 - -
Cma13g00009 952 SMART LRR_typ_2 128 152 IPR003591 -
Cma13g00009 952 SMART LRR_typ_2 200 224 IPR003591 -
Cma13g00009 952 SMART LRR_typ_2 319 343 IPR003591 -
Cma13g00009 952 Gene3D Ribonuclease Inhibitor 296 382 IPR032675 -
Cma13g00009 952 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Cma13g00009 952 ProSiteProfiles Protein kinase domain profile. 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00009 952 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524
Cma13g00009 952 CDD STKc_IRAK 630 896 - -
Cma13g00009 952 Gene3D Transferase(Phosphotransferase) domain 1 700 904 - -
Cma13g00009 952 SUPERFAMILY Protein kinase-like (PK-like) 610 927 IPR011009 -
Cma13g00009 952 SUPERFAMILY L domain-like 47 411 - -
Cma13g00009 952 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Cma13g00009 952 SMART serkin_6 624 898 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00009 952 Pfam Protein kinase domain 624 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00009 952 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cma13g00009 952 Gene3D Ribonuclease Inhibitor 188 295 IPR032675 -
Cma13g00009 952 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 15 927 - -
Cma13g00009 952 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 15 927 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00280 Cma-Chr3:3750096 Cma13g00009 Cma-Chr13:181558 0 dispersed
Cma07g01205 Cma-Chr7:6618361 Cma13g00009 Cma-Chr13:181558 0 dispersed
Cma13g00009 Cma-Chr13:181558 Cma14g00001 Cma-Chr14:353 2.23E-160 dispersed
Cma01g00737 Cma-Chr1:3882381 Cma13g00009 Cma-Chr13:181558 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68990 PF00069 Pkinase 4.30E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00009 - - csv:101208136 1629.38