Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00010 ATGGGTATGACGGCTATGGCGTTGCCGAAATGTAGAATTGGTCCTCGATTGGTGGCGGTGGGTGCCGGTGGATTGAGTTCGTCCTGCTCATACCTGCCCCCAACTGTCCGTAGCCGCACATCTGCACCCTTTCTTTTAGCTCTTTCCTTCGTCTTTCATATACCCTCCCTACCACAACTCAAACCGGCACGCGTCCATCGGCAACGCTTTTTTTTTCTTCTATTCCTCTCTGCTGAACTGCGCCGGCACGCCGGCCCCTGTGCAGCATTCTTGTACAACAGCCAATCGTCGAGGTTCTCCGTCTTTCGATCCAAAACTATCTGTGGTATTATGGATGAAATTGGGAGAGGATGCGGAGTGGTTCCCGGTATGAATAATCCATTTTGGATCATGGCTGCCACTTTTCCTTCTGTATTTGTTGTTTGCGACAAAGGAATCATGGCAGACGAAGCTCAGAATGATGCGAATGATCAGGTGGCAGATATTGCACAGTCCAATCAAGTCCTCGAGATTGTTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAGGTTGTACTTCAGGATCTGGCTGATGAGTCTGTTGACAAGTTAGCAGAGAAAACCGAAAGTTTGTCAGTTTCTGATGGCTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTATTTCCTTGAATGACGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAGAACGAAGATCAAGACGGAATTACTTTACAGTATCGTTATCCTTGGGAAGGAAGTGATCGCGATTATGAATATGAGGAGTCTCATATTCATGGTATTCTTTGCTTGCTTCTTGGACGGGTATTCAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTATTAGCCGAACTGGGAACCAGTGGATCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTTAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGACACTATCCTTTCAAAGGAGAATCGACTCTTCTTTCTCAGATGTGAGAAGTGTGGTTCTGGACGATCAGTTGCTCCCATTAAAGCTGAGACCGTCTCCACCACTGCCACTCTGTTTTGCGCCTCTTCGTCCTCTCCAAAACTAGAATATGCGATACAGCCATTGAATTTAAGACCCGCCTTTCCGTTCATTGCATTCCAGCTTGTTCTCTCATCTTCTGGAGGCGCGGCCATTGGTTACAGTAAGCTTCCTCTCTCCTGA 1440 45.9 MGMTAMALPKCRIGPRLVAVGAGGLSSSCSYLPPTVRSRTSAPFLLALSFVFHIPSLPQLKPARVHRQRFFFLLFLSAELRRHAGPCAAFLYNSQSSRFSVFRSKTICGIMDEIGRGCGVVPGMNNPFWIMAATFPSVFVVCDKGIMADEAQNDANDQVADIAQSNQVLEIVAPFDPTKKKKKKKVVLQDLADESVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEAISLNDDGADATEDLEDQAGENEDQDGITLQYRYPWEGSDRDYEYEESHIHGILCLLLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAETVSTTATLFCASSSSPKLEYAIQPLNLRPAFPFIAFQLVLSSSGGAAIGYSKLPLS 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 194995 204232 + CmaCh13G000100.1 Cma13g00010 305837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00010 479 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 286 387 IPR016189 GO:0003743|GO:0006413
Cma13g00010 479 Gene3D - 283 420 - -
Cma13g00010 479 Pfam Domain found in IF2B/IF5 305 413 IPR002735 GO:0003743|GO:0006413
Cma13g00010 479 PANTHER BNAA02G05130D PROTEIN 171 426 - -
Cma13g00010 479 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 171 426 IPR045196 GO:0003743|GO:0006413
Cma13g00010 479 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 384 419 IPR016190 GO:0003743|GO:0006413
Cma13g00010 479 SMART eIF2Bneu4 305 414 IPR002735 GO:0003743|GO:0006413
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00737 Cma13g00010 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00010 Cma-Chr13:194995 Cma01g00737 Cma-Chr1:3882381 1.18E-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00010 K03238 - csv:101220978 469.159