Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00029 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCCGGGAATTCCCATCCCTCTTTCACTTTCTCCAGTCATCCTTTTATGACTACTTCTTACTCTGACCTTCTCGCCTCCGGCTTCGACGATCCTCCTTCCTCCGCTGCACCCCACGGTTCTCTCCGGAGTTCCACTACCGGCGTTCCTAAATTCAAATCCCTCCCTCCTCCCTCTCTGCCTCTCTCTCCTCCTCCCCTTTCTCCTTCTTCCTTTTTCGCCATTCCTCCTGGCTTGAGTCCGGCCGAGCTTCTCGATTCTCCTGTTCTTCTCAGTGCTTCTCATCCTCTGCCGTCGCCGACTACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAGTTATGGTTATAATCAGCAGAGCATTAAAGAAGAAAACAAATATCTGTCCAACTTCTCATTTCAGACTCAATCGTCAAAGCCGCCGCCTTCGTCTTTTCAGCCTTCCTCCACCACAGCTCCGATGAGTTGGAGTTTTCAAGAACAGGGCAAGAAACAGGACGGTTTTCCGTCGGAGAATAATATGGTGAAGCAGAGCTTCTCACCGGAATACGGGATTGTTCAAAACCAGAGCCAAATCAACGGCGGTGGGCAGTTGCAGTCCGACTACGGCAACAATTACCCGCAACAATCTCAGACGGTGAATCGGAGGTCCGACGACGGATACAATTGGAGAAAATACGGCCAGAAACAGGTCAAGGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACCTTCCCCAGTTGCTCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCACCCAAAGCCCCAATCCACGAGAAGGTCGTCGCTGTCATCCGCCGGTTCTTCCCTATCCATGGTGGTTTCGAATCCGGCCACTAACGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGTGCCCAATTCGACGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATCGGCGACGACGACTTCGATCGTAGCTCTCAGAAGAGCAAATCCGGAGGGGACGACTATGATGAAGTCGAGCCAGAGGCGAAGAGATGGCGAAGGGATGAGAACAATGAAGGCATGTCGGCCGCCGGCAGCCGGACAGTGAGAGAGCCGAGAGTCGTCGTTCAAACCACCAGCGACATCGACATTCTCGACGACGGCTACCGGTGGAGGAAGTACGGACAGAAAGTAGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAACCCAGGATGTCCTGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCAAAGGGCAGTGATCACAACCTATGAAGGCAAGCACAACCACGATGTCCCACCGGCACGAGGCAGTGGAAGCCATTCCCTCAGCCGTGCATTCCCCAACAACGACCCTCCAGCCACCGCAATCCGCCCGTCCGCGGTGGCCCACCAGTCAAACAACGGCGGTCATCAGTCCCTGCAGACAGCATTCGCGGTGGAAATGGTCCAAAATCCCCATGGATTTTCATTCCCGGAATTCGGAAACTCAATGGGAATGGGATCGGGATCTTACATGAACCAAAACCAACCCAACCATAATTTGTTCCCTCGAGCCAAAGAAGAGCCCAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTGA 1695 52.09 MASSSGSLDTSGNSHPSFTFSSHPFMTTSYSDLLASGFDDPPSSAAPHGSLRSSTTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHPLPSPTTGSFPSQSLNWKSSYGYNQQSIKEENKYLSNFSFQTQSSKPPPSSFQPSSTTAPMSWSFQEQGKKQDGFPSENNMVKQSFSPEYGIVQNQSQINGGGQLQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPSCSTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSLSMVVSNPATNEMADQSFTTQGSAQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDYDEVEPEAKRWRRDENNEGMSAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDQRAVITTYEGKHNHDVPPARGSGSHSLSRAFPNNDPPATAIRPSAVAHQSNNGGHQSLQTAFAVEMVQNPHGFSFPEFGNSMGMGSGSYMNQNQPNHNLFPRAKEEPRDHDMFIQSLLC 564
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 373134 375249 + CmaCh13G000290.1 Cma13g00029 305856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00029 564 MobiDBLite consensus disorder prediction 63 81 - -
Cma13g00029 564 Gene3D WRKY domain 389 455 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 277 303 - -
Cma13g00029 564 MobiDBLite consensus disorder prediction 138 185 - -
Cma13g00029 564 SUPERFAMILY WRKY DNA-binding domain 394 462 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 100 119 - -
Cma13g00029 564 ProSiteProfiles WRKY domain profile. 229 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 340 377 - -
Cma13g00029 564 MobiDBLite consensus disorder prediction 36 82 - -
Cma13g00029 564 ProSiteProfiles WRKY domain profile. 397 462 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 103 119 - -
Cma13g00029 564 SUPERFAMILY WRKY DNA-binding domain 227 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 Gene3D WRKY domain 215 288 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 326 388 - -
Cma13g00029 564 SMART WRKY_cls 402 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 SMART WRKY_cls 228 286 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 47 61 - -
Cma13g00029 564 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 48 506 - -
Cma13g00029 564 MobiDBLite consensus disorder prediction 454 499 - -
Cma13g00029 564 Pfam WRKY DNA -binding domain 229 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 Pfam WRKY DNA -binding domain 403 459 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma13g00029 564 MobiDBLite consensus disorder prediction 283 303 - -
Cma13g00029 564 MobiDBLite consensus disorder prediction 203 233 - -
Cma13g00029 564 MobiDBLite consensus disorder prediction 203 228 - -
Cma13g00029 564 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 48 506 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00709 Cma13g00029 CCT
Cma02g00709 Cma13g00029 ECH
Cma01g00711 Cma13g00029 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00029 Cma-Chr13:373134 Cma14g00032 Cma-Chr14:149735 2.23E-111 dispersed
Cma01g00711 Cma-Chr1:3726739 Cma13g00029 Cma-Chr13:373134 0 wgd
Cma13g00029 Cma-Chr13:373134 Cma02g00709 Cma-Chr2:4293272 7.71E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36061 PF03106 WRKY 2.20E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00029 K13424 - csv:101207158 893.264