Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00044 ATGTCCACCACCGAGAAACCCGAACTTGTCTGCGTCACCGGCGGCAGTGGCTGTATTGGATCCTGGCTCGTTCACCTCCTCCTCCTCCGCGGCTACTCCGTCCACGCCACCGTCCAAAATCTCAAGGATGAGAACGAAACCAAGCATCTGGAGGCTTTAGAAGGAGCGGAAGCTCGTCTTCGTCTCTTCCAAATTGACCTCCTCGATTATGACTCCATTGCCGCCGCCGTCTCTGGTTGCTCCGGCGTCTTCCACGTTGCGTCTCCTTGCATTGTTGACCCTGTAGAAGATCCTGAGAGGGATTTACTGGATCCAGCTATCAAAGGAACCATCAATGTCCTGACGGCGGCTAAGGAGGCTGGGGTACAACGCGTAGTGGTAACTTCTTCTATCTCCTCCATGATTCCGAACCCTAACTGGCCAGCGAATGTTGTAATAAATGAAGAATGCTGGACAGATATTGATTACTGCAAGCAAAAGGGGCTGTGGTATTCAGTTTCGAAAACTCTAGCAGAAAAGGCTACTTGGAATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTGATGGGCCCTGTGTTTCCTCCCAGAATTAATGCTAGCATGCAAATGCTTTTAAAACTTCTCAAGGGGTGCAATGAGACATTTGAGGACGTCTTTATCGGAGTTGTGCATTTTAAAGATGTTGCATTAGCACATATTTTGGTGTATGAAAACAAAGCAGCAACAGGAAGACACTTTTGTGCTGAGGCCATAGCTGGTTACTCGGACTATGCTGCCAAGGTTGCTGAACTCTTCCCTCAGTATGAGGTGCCCAGGTCGATAGAAGATACGCAACCTGGTTTGGTGAGAACAAAAGATGGAGGTAATAAGTTGATGAAGCTGGGGCTGGAATTCATCCCAATGGAACAAATCCTCAAGGACGCCGTTGAGGATCTAAAAAAGAAGGGATATATTTCCTGA 978 48.06 MSTTEKPELVCVTGGSGCIGSWLVHLLLLRGYSVHATVQNLKDENETKHLEALEGAEARLRLFQIDLLDYDSIAAAVSGCSGVFHVASPCIVDPVEDPERDLLDPAIKGTINVLTAAKEAGVQRVVVTSSISSMIPNPNWPANVVINEECWTDIDYCKQKGLWYSVSKTLAEKATWNFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLKGCNETFEDVFIGVVHFKDVALAHILVYENKAATGRHFCAEAIAGYSDYAAKVAELFPQYEVPRSIEDTQPGLVRTKDGGNKLMKLGLEFIPMEQILKDAVEDLKKKGYIS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 430330 436639 + CmaCh13G000440.1 Cma13g00044 305871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00044 325 Gene3D - 2 325 - -
Cma13g00044 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 319 IPR036291 -
Cma13g00044 325 Pfam NAD dependent epimerase/dehydratase family 10 252 IPR001509 -
Cma13g00044 325 CDD FR_SDR_e 10 302 - -
Cma13g00044 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 - -
Cma13g00044 325 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 316 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00875 Cma-Chr4:4497614 Cma13g00044 Cma-Chr13:430330 3.34E-100 dispersed
Cma13g00044 Cma-Chr13:430330 Cma14g01058 Cma-Chr14:5639941 7.45E-93 dispersed
Cma13g00044 Cma-Chr13:430330 Cma14g01057 Cma-Chr14:5613286 2.75E-96 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00044 - - csv:101204420 585.489