Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00056 | ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCCTCGATGTTCTGCAACAAGACGTCGATTATTTCTCCGGCACCGGAGGCGCTGACACTCACTTTGGCTCATTTGAATTCATCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGGAAAAGACCAGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTTGTGGAGGCAGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTATTCTGCCGTCGTTGATCTTCGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGAAACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAACGGCAACCTCGTCGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCACGGCGTTGCTGAGGCCATCACGTCGGACCACCGCCCGTCCCGGGAAGACGAAAGGCAGCGGATTGAGTCCACGGGTGGATATGTTGATATGTGCAATAATGGGGTTTGGAGAGTGCAGGGGTCTCTGGCTGTCACAAGAGGTATTGGTGATGCTCACCTCAAACGATGGGTGATAGCTGAGCCTGAGACGAGGGCGATTCGTATCGAGCCTCGACATGAGTTCTTGATCTTGGCCTCAGATGGATTATGGGATACGGTGAGCAATCAAGAAGCAGTGGAGATTGCATATCCATTGTGTGTAGGGATTGAGAAGGCGCAGCCATTGGTGGCGTGTAAAAAGCTTGTGGAGCTATCTATTTCAAGGGGCTCAGTTGATGACATTAGTGTAGTACTCATTCAATTGCCTAACTTCATCTAA | 1158 | 51.12 | MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRYSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNETDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKNGNLVVSNIGDCRAVLSSHGVAEAITSDHRPSREDERQRIESTGGYVDMCNNGVWRVQGSLAVTRGIGDAHLKRWVIAEPETRAIRIEPRHEFLILASDGLWDTVSNQEAVEIAYPLCVGIEKAQPLVACKKLVELSISRGSVDDISVVLIQLPNFI | 385 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 481976 | 483876 | - | CmaCh13G000560.1 | Cma13g00056 | 305883 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00056 | 385 | Gene3D | - | 127 | 384 | IPR036457 | - | |
Cma13g00056 | 385 | ProSitePatterns | PPM-type phosphatase domain signature. | 158 | 166 | IPR000222 | GO:0043169 | |
Cma13g00056 | 385 | CDD | PP2Cc | 126 | 381 | IPR001932 | - | |
Cma13g00056 | 385 | SUPERFAMILY | PP2C-like | 126 | 383 | IPR036457 | - | |
Cma13g00056 | 385 | Pfam | Protein phosphatase 2C | 132 | 374 | IPR001932 | - | |
Cma13g00056 | 385 | SMART | PP2C_4 | 119 | 379 | IPR001932 | - | |
Cma13g00056 | 385 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 3 | 384 | - | - | |
Cma13g00056 | 385 | SMART | PP2C_SIG_2 | 145 | 381 | IPR001932 | - | |
Cma13g00056 | 385 | ProSiteProfiles | PPM-type phosphatase domain profile. | 126 | 381 | IPR001932 | - | |
Cma13g00056 | 385 | PANTHER | PROTEIN PHOSPHATASE 2C | 3 | 384 | IPR015655 | GO:0004722|GO:0006470 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma01g00677 | Cma13g00056 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma13g00056 | Cma-Chr13:481976 | Cma15g00017 | Cma-Chr15:115908 | 1.58E-92 | dispersed | |
Cma01g00677 | Cma-Chr1:3539633 | Cma13g00056 | Cma-Chr13:481976 | 0 | wgd | |
Cma13g00056 | Cma-Chr13:481976 | Cma04g00146 | Cma-Chr4:698808 | 1.91E-120 | wgd | |
Cma13g00056 | Cma-Chr13:481976 | Cma04g01108 | Cma-Chr4:5711935 | 3.64E-120 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00056 | K17506 | - | csv:101207841 | 621.313 |