Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00056 ATGTCGGTCTCCGTCGCGGTGTCCAACTCGCCGGGATTTTCCCCTTCCTCCTCGATGTTCTGCAACAAGACGTCGATTATTTCTCCGGCACCGGAGGCGCTGACACTCACTTTGGCTCATTTGAATTCATCGTCTTGCTCTTCTTCGCCTTCTTCGCCTTCTTCCCCTTTTCGGATTCGGTTTCCGAAGCCCCCTTCTGGGCTTTCCGCAGCGGCGGTGGCTTCCACCTCTTCTCCTTCATCGGCGTCGTCCGGCGCGATATTGAAAAGGAAAAGACCAGCGAGGTTGGATATTCCGTTGATGCCGTTGAGTTTTGCGGCTCCGGTGATGCCGTCGCCGTCGTCGTTCAGGGAGGTTGTGGAGGCAGAGAGAGATGGGTACTCTGTGTATTGCAAGAGAGGGAGGCGGAGAGTTTCCATGGAAGATCGGTATTCTGCCGTCGTTGATCTTCGAGGAAATTCCAAAGAGGCGTTTTTTGGTGTTTTTGATGGACATGGCGGCGCAAAAGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACATTTTGAATGAAATTGAAACAATGGCTGATAACGAAACTGATTTTGAAGAAGCCATTAAACATGGCTACCTCACCACAGATTCTGAGTTCCTCAAGGAGGATCAACGCGGTGGCTCATGTTGTGTGACAGCCCTGATCAAGAACGGCAACCTCGTCGTCTCCAACATCGGTGACTGTCGTGCTGTTCTCAGCAGCCACGGCGTTGCTGAGGCCATCACGTCGGACCACCGCCCGTCCCGGGAAGACGAAAGGCAGCGGATTGAGTCCACGGGTGGATATGTTGATATGTGCAATAATGGGGTTTGGAGAGTGCAGGGGTCTCTGGCTGTCACAAGAGGTATTGGTGATGCTCACCTCAAACGATGGGTGATAGCTGAGCCTGAGACGAGGGCGATTCGTATCGAGCCTCGACATGAGTTCTTGATCTTGGCCTCAGATGGATTATGGGATACGGTGAGCAATCAAGAAGCAGTGGAGATTGCATATCCATTGTGTGTAGGGATTGAGAAGGCGCAGCCATTGGTGGCGTGTAAAAAGCTTGTGGAGCTATCTATTTCAAGGGGCTCAGTTGATGACATTAGTGTAGTACTCATTCAATTGCCTAACTTCATCTAA 1158 51.12 MSVSVAVSNSPGFSPSSSMFCNKTSIISPAPEALTLTLAHLNSSSCSSSPSSPSSPFRIRFPKPPSGLSAAAVASTSSPSSASSGAILKRKRPARLDIPLMPLSFAAPVMPSPSSFREVVEAERDGYSVYCKRGRRRVSMEDRYSAVVDLRGNSKEAFFGVFDGHGGAKAAEFAANNLEKNILNEIETMADNETDFEEAIKHGYLTTDSEFLKEDQRGGSCCVTALIKNGNLVVSNIGDCRAVLSSHGVAEAITSDHRPSREDERQRIESTGGYVDMCNNGVWRVQGSLAVTRGIGDAHLKRWVIAEPETRAIRIEPRHEFLILASDGLWDTVSNQEAVEIAYPLCVGIEKAQPLVACKKLVELSISRGSVDDISVVLIQLPNFI 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 481976 483876 - CmaCh13G000560.1 Cma13g00056 305883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00056 385 Gene3D - 127 384 IPR036457 -
Cma13g00056 385 ProSitePatterns PPM-type phosphatase domain signature. 158 166 IPR000222 GO:0043169
Cma13g00056 385 CDD PP2Cc 126 381 IPR001932 -
Cma13g00056 385 SUPERFAMILY PP2C-like 126 383 IPR036457 -
Cma13g00056 385 Pfam Protein phosphatase 2C 132 374 IPR001932 -
Cma13g00056 385 SMART PP2C_4 119 379 IPR001932 -
Cma13g00056 385 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 384 - -
Cma13g00056 385 SMART PP2C_SIG_2 145 381 IPR001932 -
Cma13g00056 385 ProSiteProfiles PPM-type phosphatase domain profile. 126 381 IPR001932 -
Cma13g00056 385 PANTHER PROTEIN PHOSPHATASE 2C 3 384 IPR015655 GO:0004722|GO:0006470
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00677 Cma13g00056 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00056 Cma-Chr13:481976 Cma15g00017 Cma-Chr15:115908 1.58E-92 dispersed
Cma01g00677 Cma-Chr1:3539633 Cma13g00056 Cma-Chr13:481976 0 wgd
Cma13g00056 Cma-Chr13:481976 Cma04g00146 Cma-Chr4:698808 1.91E-120 wgd
Cma13g00056 Cma-Chr13:481976 Cma04g01108 Cma-Chr4:5711935 3.64E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00056 K17506 - csv:101207841 621.313