Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00080 ATGGCCAACGACGTCGTTTTTCCCTTCCCCACTTTTTTTCTCACTCTCTTTCTCACCTATTTGATTTGGTTTTATTTCCTCGCCCGTAAGCTTACTGGTCCAAGAGTATGGCCGGTCATCGGCAGTCTACCGGCTCTTTTCTCGAACCGGCGGAGACTCCATGACTGGATGGCCGGAAACCTCCGCGACACAGGCGCCGCTGCCACGTACCAAACCTGCACGGTGGCGGTTCCATTCATTGCTAAAAAGCAAGGATTTTACACTGTCACGTGCCACCCGAGAAACATCGAGCACGTGCTGCGAACCCGGTTCGAAAATTACCCTAAAGGACCGGACTGGCAGGCGGCTTTTCACGATTTACTGGGACAGGGGATTTTCAACAGCGACGGCGAAATTTGGCTGATTCAGCGGAAGACGGCGGCGCTGGAGTTCACGACGAGGACGCTCCGGCAGGCGATGGATCGGTGGGTTAATCGAACGATAAGGACGCGACTGTGGTGCATTTTGGACAAGGCGGCGGAGTATAAGACGGCGGTGGATTTGCAGGATCTGTTGCTCCGGTTGACTTTTGATAATATTTGTGGGCTGACTTTTGGGAAAGATCCTGAAACTCTGTCGCCGGAATTGCCTACAAATTCCTTCGCTTTGGCCTTTGATACCGCCACTGAGGCCACTCTCCAGCGCCTTCTTTACCCTGGTCTTATATGGAGGTTCGAGAAGCTTCTGGGGATTGGAATGGAAAGAAGGTTGAAGAAGTGTCTGAAAGTGGTAGAAGAATACATAAACGACGCCGTTGCATCCCGTAAAGAATCTCCCTCGGACGACTTATTATCACGCTTCATGAAGAAGCGCGACGACGACCGCTTCTCCGCCACCGTGCTCCACCGCATCGCATTAAACTTCGTCCTCGCCGGTCGGGACACCTCCTCCGTCGCCCTCACCTGGTTCTTTTGGCTCGTAATGAACCACCCACACGTCGAGGAAAAAATCCTCACCGAAATCTCAACGGTCCTTCGTCAAACACGTGGCGACGATACGCGCCGTTGGATCGAAGAGCCGTTGGTGTTCGACGAGGCCGACAAATTGGTGTACTTAAAAGCCGCATTGGCTGAAACACTCCGTTTATACCCGTCCGTACCACAGGATTTCAAATATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCGGCCGGTTCGACTGTGACGTATTCAATTTATTCGGTCGGGAGAATGAAGAGCATTTGGGGGGAGGATTGTGAGGAATTTAAACCGGACCGGTGGTTATCGCCGGCCGGAGACCGGTTCGAGGGGCAGAAGGATGTGTATAAGTTTGTGGCGTTTAATGCTGGACCGAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAGATGAAGTCCGTCGCCTCTGCCGTACTCCTCCGGTACCGGCTGGCGCCAGTTCCCGGTCATCGGGTGGAACAGAAGATGTCTCTCACTCTTTTTATGAAGAATGGGCTTCGTGTTTATTTGCATCCCCGCCGGCTCGGCTAG 1539 52.96 MANDVVFPFPTFFLTLFLTYLIWFYFLARKLTGPRVWPVIGSLPALFSNRRRLHDWMAGNLRDTGAAATYQTCTVAVPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILDKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPETLSPELPTNSFALAFDTATEATLQRLLYPGLIWRFEKLLGIGMERRLKKCLKVVEEYINDAVASRKESPSDDLLSRFMKKRDDDRFSATVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKILTEISTVLRQTRGDDTRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCEEFKPDRWLSPAGDRFEGQKDVYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLG 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 600631 602169 - CmaCh13G000800.1 Cma13g00080 305907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00080 512 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cma13g00080 512 Gene3D Cytochrome P450 27 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 Pfam Cytochrome P450 88 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PANTHER CYTOCHROME P450 12 510 - -
Cma13g00080 512 SUPERFAMILY Cytochrome P450 23 509 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PRINTS P450 superfamily signature 457 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00080 512 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 12 510 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00654 Cma13g00080 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00080 Cma-Chr13:600631 Cma17g00437 Cma-Chr17:2600115 0 dispersed
Cma14g00711 Cma-Chr14:3599654 Cma13g00080 Cma-Chr13:600631 1.50E-96 dispersed
Cma01g00654 Cma-Chr1:3418591 Cma13g00080 Cma-Chr13:600631 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00080 K15401 - csv:101214516 958.362