Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00118 ATGGATAATATCCTCGACGATTTCCCCAATTCCTTCAACAATTTTCACTTCAATCCCCAACTCTCTAATGGGTTTCTCAAAATCAACCGCGAAACCGTCGATCCCCTCGAGATTCCGGCGAAGCCGCAGCAAAATCAGCAGCAAATCAGTAATAATTCATCATCGCCGTCGTCGATGTCGCCGTCGACCTCCGAGGGAGACTCGCCGGACAGCCAAGACACCTCGAATACGATGCTGAAATACATCACCGAGATGCTGATGGATGAAGGAGAGGATCTTAAAACAAAACCCTGTATGCTTCTTGATTGCTTGGCTCTTCAAGCTGCTGAGAAGTCTTTTTATGATGTTCTTGGCCAGAAATATCCTCCTTCTCCGACAGGAAATGGCGATTCACCTCAGGATTTCAGCTGCGGTGAAGCTCTAGGTGACTCCTCTGTTCTTGGATTGTCTGAAAATTGTGTTGTGGGTCATGATTCGTTTGTTGGGATGCAATATATTGGGCATTTTAGGCAAGGAGTTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAACATTTGGGACAATTGATTTGGATAATGATTTGTGTGTGTCTGTTCCTTTTAAGGATGTTGATGTTTCTAGGATTAGTGGGTCGTTGAGAGACAAGAAAAACCGACAGAGGGAGGAGGAGAGTGATGGGGAGCTGAGAAGTAGTAAGCAGTCAGCTACTTTTGCTGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTGTTGTGTCGGGGCGAGAGTCGGCGGTCGCCGTGTGGTTCGGATGAATCGTCGGAGACCGAAGTGAATAAGAAGAAATCGAGAGGGCGGAGAAGGAAAGGGAAGAAAACTCGATCTAAGAAGCAAGATAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTAACACAATGTGCTCAAGCTATTTCGAATTATGATCAAAGAACTGCTAATGAGCTGTTGAATCAGATCAGGCAGCATTCTAGTCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTCGCTAACGGTCTCGAGACTCGGCTTGCGGCCGGGACGCCTCTGTATATGCCCTTTGCAAGTAATGAAACCTCGGCTGCTGAGATCCTGAAAGCGTTTCAGATGTTCATTAGGGCGTGCCCGTTTCGGCGTATGTCGTATTTCTATGCGAATCGAACGATTATGAAGCTAGCTGAGAAAGAAACAACGCTGCATATCATTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGTTTGATTCAGCGGCTCTCTCGTCGACCTGGTGGACCTCCCAAGGTTCGAATCACAGGGATTGAGCTTCCCCAGCCGGGGTTCCGCCCTGCTGAACGGGTCGAGCAGACTGGTCGTCGCCTTGCACATTACTGTAAGAGATTCAATGTGCCATTTGAGCACAAGGTCTTAGCTCAGAAATGGGAAACGGTTAAATACGAGGATCTTAATGTCGATCGAGACGAATTGACTATCGTGACTTGTTTGTTCCGACTTAAGAACGTACCCGACGAAACCGTGGTTGCAAACAGTCCACGAGACAGGGTTCTGAAGTTGATAAGGAAAATCAACCCGGATCTCTTCATTCATGAAGTGATCAATGGCTCATTCAACACTCCTTTCTTCAACACAAGGTTTAAAGAGGCATTGTTTCATTACTCATCATTGTTCGACATGTACGAAGCGACGATGCCTCGAGATATCCCGGAGAGGCATCTATGTGAGAAGGAAATCTTAGGAAGAGACATCGTGAACGTGATAGCGTGCGAGGGGCTTGAGAGAGTTGAAAGGCCAGAGACATACAAGCAATGGCAAGTAAGGAACACGAGGGCCGGGTTCAAGCAAGTACCATTAGATCAGGATCTGCTGAAGAATGTGGAGAAGATAGTGAACACAGAATACCACCAAGACTTCGTGATCGATCAGGACGGGTCGTGGATGTTGCAAGGGTGGAAGGGTCGGATCATCTACGCGTTATCGTGTTGGGTAGTCGCCTAA 2025 46.57 MDNILDDFPNSFNNFHFNPQLSNGFLKINRETVDPLEIPAKPQQNQQQISNNSSSPSSMSPSTSEGDSPDSQDTSNTMLKYITEMLMDEGEDLKTKPCMLLDCLALQAAEKSFYDVLGQKYPPSPTGNGDSPQDFSCGEALGDSSVLGLSENCVVGHDSFVGMQYIGHFRQGVEEASKFLPVNGTFGTIDLDNDLCVSVPFKDVDVSRISGSLRDKKNRQREEESDGELRSSKQSATFADDNSLSDLFDEVLLCRGESRRSPCGSDESSETEVNKKKSRGRRRKGKKTRSKKQDNSVGVVDLWTLLTQCAQAISNYDQRTANELLNQIRQHSSPSGDGNQRLAHYFANGLETRLAAGTPLYMPFASNETSAAEILKAFQMFIRACPFRRMSYFYANRTIMKLAEKETTLHIIDFGILYGLQWPCLIQRLSRRPGGPPKVRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVKYEDLNVDRDELTIVTCLFRLKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVINGSFNTPFFNTRFKEALFHYSSLFDMYEATMPRDIPERHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKNVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIYALSCWVVA 674
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 798320 800344 - CmaCh13G001180.1 Cma13g00118 305945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00118 674 MobiDBLite consensus disorder prediction 258 276 - -
Cma13g00118 674 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 672 IPR005202 -
Cma13g00118 674 Pfam GRAS domain family 304 671 IPR005202 -
Cma13g00118 674 MobiDBLite consensus disorder prediction 258 293 - -
Cma13g00118 674 ProSiteProfiles GRAS family profile. 293 672 IPR005202 -
Cma13g00118 674 MobiDBLite consensus disorder prediction 214 230 - -
Cma13g00118 674 PANTHER SCARECROW-LIKE PROTEIN 30 43 672 - -
Cma13g00118 674 MobiDBLite consensus disorder prediction 214 236 - -
Cma13g00118 674 MobiDBLite consensus disorder prediction 40 75 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00118 Cma-Chr13:798320 Cma20g00670 Cma-Chr20:3070596 4.34E-70 dispersed
Cma01g00616 Cma-Chr1:3211473 Cma13g00118 Cma-Chr13:798320 0 wgd
Cma13g00118 Cma-Chr13:798320 Cma14g00142 Cma-Chr14:584353 0 wgd
Cma13g00118 Cma-Chr13:798320 Cma02g00793 Cma-Chr2:4707257 0 wgd
Cma13g00118 Cma-Chr13:798320 Cma20g00394 Cma-Chr20:1888552 1.34E-09 wgd
Cma13g00118 Cma-Chr13:798320 Cma06g00294 Cma-Chr6:1409245 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36065 PF03514 GRAS 1.50E-115 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00118 - - bhj:120083055 1094.34