Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g00123 | ATGGCTAAACCCGCCGTTCTCCTCTGCCTTGTGTCTCTCATCTCAGCAATGTGGACGGCCGCTGCTAGAATTCCCGGCGCCTACTCCGGTGGCCCATGGCAAACCGCTCACGCCACCTTCTACGGCGGCTCCGACGCATCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGGTACGGGGTGAACACGGCGGCGTTGAGTACGGCGCTATTCAACAATGGGCTGAGCTGTGGCGCGTGTTTCGAGATCAAATGTGCGAATGACCCGAGATGGTGCCATTCGGGTAGCCCGTCGATTGTCATTACGGCTACCAACTTCTGCCCGCCCAACTTTGCTCTGCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCGCATTTCGATTTGGCCATGCCTATGTTTCTCAAGATCGCTGAATATCGCGCCGGTATCGTCCCCGTCGCCTACCGCCGGGTGTCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCATGGGTTTAGGTACTTCAACTTGGTTTTAATCACGAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAGGGCACGCGAACCGGGTGGATGAGAATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCACTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACATCCACCACGTATAACGTGGCGCCAGATGATTGGCAGTTTGGTCAGACCTTCATCGGCAAGAATTTTAGGGTTTGA | 780 | 56.92 | MAKPAVLLCLVSLISAMWTAAARIPGAYSGGPWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVSCRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMRMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTTYNVAPDDWQFGQTFIGKNFRV | 259 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 843427 | 845544 | + | CmaCh13G001230.1 | Cma13g00123 | 305950 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g00123 | 259 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 51 | 165 | IPR007112 | - | |
| Cma13g00123 | 259 | PANTHER | EXPANSIN | 6 | 258 | - | - | |
| Cma13g00123 | 259 | SUPERFAMILY | Barwin-like endoglucanases | 10 | 183 | IPR036908 | - | |
| Cma13g00123 | 259 | Pfam | Expansin C-terminal domain | 166 | 243 | IPR007117 | - | |
| Cma13g00123 | 259 | Gene3D | - | 165 | 257 | IPR036749 | - | |
| Cma13g00123 | 259 | Gene3D | - | 19 | 161 | IPR036908 | - | |
| Cma13g00123 | 259 | PANTHER | EXPANSIN-A15 | 6 | 258 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 63 | 77 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 90 | 101 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 104 | 114 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 123 | 140 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 140 | 153 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 164 | 176 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 176 | 197 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 211 | 232 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | PRINTS | Expansin signature | 240 | 256 | IPR002963 | GO:0009664 | |
| Cma13g00123 | 259 | SUPERFAMILY | PHL pollen allergen | 162 | 253 | IPR036749 | - | |
| Cma13g00123 | 259 | Pfam | Lytic transglycolase | 68 | 155 | IPR009009 | - | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 32 | 47 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 50 | 68 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 72 | 90 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 148 | 164 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 202 | 216 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | PRINTS | Expansin/Lol pI family signature | 240 | 254 | IPR007118 | GO:0005576 | |
| Cma13g00123 | 259 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 175 | 254 | IPR007117 | - | |
| Cma13g00123 | 259 | SMART | dpbb_1 | 68 | 155 | IPR007112 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma02g00797 | Cma13g00123 | CCT | |
| Cma13g00123 | Cma20g00396 | CCT | |
| Cma02g00797 | Cma13g00123 | ECH | |
| Cma13g00123 | Cma20g00396 | ECH | |
| Cma01g00609 | Cma13g00123 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma03g00422 | Cma-Chr3:4515929 | Cma13g00123 | Cma-Chr13:843427 | 1.55E-161 | dispersed | |
| Cma04g02655 | Cma-Chr4:18055290 | Cma13g00123 | Cma-Chr13:843427 | 6.81E-138 | dispersed | |
| Cma13g00123 | Cma-Chr13:843427 | Cma04g01668 | Cma-Chr4:8389926 | 3.41E-125 | dispersed | |
| Cma15g00765 | Cma-Chr15:3755522 | Cma13g00123 | Cma-Chr13:843427 | 2.90E-94 | dispersed | |
| Cma01g00609 | Cma-Chr1:3176629 | Cma13g00123 | Cma-Chr13:843427 | 0 | wgd | |
| Cma13g00123 | Cma-Chr13:843427 | Cma02g00797 | Cma-Chr2:4725802 | 3.25E-165 | wgd | |
| Cma13g00123 | Cma-Chr13:843427 | Cma20g00396 | Cma-Chr20:1904421 | 1.01E-167 | wgd | |
| Cma13g00123 | Cma-Chr13:843427 | Cma04g00211 | Cma-Chr4:1005461 | 3.00E-166 | wgd | |
| Cma13g00123 | Cma-Chr13:843427 | Cma04g01180 | Cma-Chr4:6015443 | 8.71E-139 | wgd | |
| Cma13g00123 | Cma-Chr13:843427 | Cma07g00999 | Cma-Chr7:5154276 | 3.42E-163 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g00123 | - | - | csv:101206662 | 515.383 |