Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00132 ATGGAGGAAGAAAACGGCGCTCTGATTCAGAGCCTGATTGATGTAGTGAACGAGATTGCTTGGATCTCGGATTTTAGGCATACTGTCAAGAAGCAGTACTGCAATTTGTCCAGGAGATTGAAGCTTTTGATCCCAATGTTCGAAGAGATTAGGGATAGCCAAGAGCCAGTCCCCGAGGATACTCTCAAGGCTCTCGTATTGTTGAAAGAAGGTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAGGGGAGCAAGATTTTCCTGGCCATAGAGAGGGAGCAAATTATGAACAAATTTAATGAGGTAACCGCTCGGTTGGAACAAGCTTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTCGAGCTTGTTCTTGCTCAGTTCAGAAGAGCCAAAGGCAGGGCCGATGTTCCTGACTCTGAGTTATTGGATGATATCTCTGCCCTTTATAACACGAGCAATGATTCTTCTATAGATCAAGATCGGCTGAGGAGACTGTCCGAAAAATTACAGTTATTAGGAATATCCGATCTTGCACAAGAGTCAATAGCTTTGCATGAGATGGTTACTGCTACTGATGGAGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTGAAGAAAATAAAAGATTTCGTGCAAACGGAGAACCTTGAAATGGACGATCCTGGTAGAGAAAAGAATTCTCCAGCAAGTTGTAGTGGACAAATATCCAATGATAAAAATAACAAGGCTCCAATCATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAATCCGGGCATGGGACGTGTCCGAAGACACAACAGAAACTTTCAAGCACTACTCTTACACCAAATTATGTGTTGCGTAGCCTTATAGCCCAGTGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGTAGTGCTCGACCTTGTAGAAGCTCGTCTTCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCGAAACGGAATGCAGACAATCGTGTTGCTATAGCTGAGGCTGGTGCAATACCTCTCCTTGTTGGCCTTCTTTCAACTCCCGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTTCTCAAGAAGGGGAGCATGGAAGCTCGGGAGAATGCTGCAGCCACTCTTTTCAGCCTTTCAGTGGTGGATGAAAATAAAGTTCGAATCGGTGCCTCCGGAGCTATCCCGCCGCTCGTCACGCTGCTCAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCTCTTTTCAACTTGTGCATCTACCAAGGAAACAAGGGAAAGGCAGTAAGAGCTGGCGTTGTTCCAACCTTGATGCAGCTTCTCACTGAACCTGGAACAGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTCGCCAGCCATTCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTACCGGTTTTGGTCGATGTTATCGGTACAGGATCACCGAGGAACAGAGAGAATGCAGCTGCAGTTCTCGTGCACCTTTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGAGATCTTGGAGTGGTAAGTTCATTGATAGATTTGGCACGCAGTGGCACTGACAGAGGAAAGCGAAAAGCTGCTCAGTTGCTTGAGCGAATGAACCGACTCTTCGAGCACGCAGTGCACCCAGAGGAGATTCGAGTGCTTCGGTTGCAAGCACCGGAGTCTCGACCTCAAAACCAGGCATCACAATCAACCTCCACCACGGAAGTCGTCGGTAGCTGA 2013 47.49 MEEENGALIQSLIDVVNEIAWISDFRHTVKKQYCNLSRRLKLLIPMFEEIRDSQEPVPEDTLKALVLLKEGLESAKKLLRFGSEGSKIFLAIEREQIMNKFNEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADVPDSELLDDISALYNTSNDSSIDQDRLRRLSEKLQLLGISDLAQESIALHEMVTATDGDPGQSIEKMAGLLKKIKDFVQTENLEMDDPGREKNSPASCSGQISNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLESGHGTCPKTQQKLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHSEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARDLGVVSSLIDLARSGTDRGKRKAAQLLERMNRLFEHAVHPEEIRVLRLQAPESRPQNQASQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 899216 903802 + CmaCh13G001320.1 Cma13g00132 305959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00132 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Cma13g00132 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Cma13g00132 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Cma13g00132 670 MobiDBLite consensus disorder prediction 650 670 - -
Cma13g00132 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
Cma13g00132 670 CDD RING-Ubox_PUB 262 304 IPR045210 -
Cma13g00132 670 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Cma13g00132 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Cma13g00132 670 SMART arm_5 591 631 IPR000225 GO:0005515
Cma13g00132 670 SMART arm_5 426 466 IPR000225 GO:0005515
Cma13g00132 670 SMART arm_5 467 507 IPR000225 GO:0005515
Cma13g00132 670 SMART arm_5 549 589 IPR000225 GO:0005515
Cma13g00132 670 SMART arm_5 508 548 IPR000225 GO:0005515
Cma13g00132 670 SMART arm_5 385 425 IPR000225 GO:0005515
Cma13g00132 670 MobiDBLite consensus disorder prediction 229 254 - -
Cma13g00132 670 Gene3D - 344 666 IPR011989 -
Cma13g00132 670 MobiDBLite consensus disorder prediction 239 253 - -
Cma13g00132 670 Gene3D - 7 117 IPR036537 GO:0007166
Cma13g00132 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Cma13g00132 670 PANTHER U BOX DOMAIN-CONTAINING 6 646 - -
Cma13g00132 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Cma13g00132 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Cma13g00132 670 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Cma13g00132 670 MobiDBLite consensus disorder prediction 648 670 - -
Cma13g00132 670 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 646 - -
Cma13g00132 670 SUPERFAMILY RING/U-box 250 334 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00132 Cma20g00410 CCT
Cma01g00596 Cma13g00132 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00997 Cma-Chr4:5158776 Cma13g00132 Cma-Chr13:899216 5.49E-165 dispersed
Cma04g01383 Cma-Chr4:7077270 Cma13g00132 Cma-Chr13:899216 0 dispersed
Cma04g02893 Cma-Chr4:19175211 Cma13g00132 Cma-Chr13:899216 9.03E-122 dispersed
Cma07g00289 Cma-Chr7:1286470 Cma13g00132 Cma-Chr13:899216 2.14E-59 dispersed
Cma13g00132 Cma-Chr13:899216 Cma18g00906 Cma-Chr18:7786736 0 dispersed
Cma18g00432 Cma-Chr18:2389946 Cma13g00132 Cma-Chr13:899216 1.59E-99 dispersed
Cma12g00122 Cma-Chr12:504980 Cma13g00132 Cma-Chr13:899216 1.65E-30 transposed
Cma01g00596 Cma-Chr1:3130763 Cma13g00132 Cma-Chr13:899216 0 wgd
Cma13g00132 Cma-Chr13:899216 Cma02g00810 Cma-Chr2:4791084 3.32E-16 wgd
Cma13g00132 Cma-Chr13:899216 Cma20g00410 Cma-Chr20:1964270 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00132 - - csv:101218572 1137.09