Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00133 ATGGATTTCTCCTCTCTTCCACTCTTTTTAGATCCTCCTCCCAATTGCCTTCAGCCATCAAATCATGTCGGTGGCGGTGGAGTTAGCTCGATTCGACGCGGTTCCATGGCCGACCGAGCTCGGTTGGCTAACGTACCTCTACCGGAGATGGCACTCAAGTGTCCTAGATGTGATTCAACCAACACCAAATTTTGTTACTTCAATAACTATAGTCTCTCTCAACCGCGCCATTTCTGTAAGGCTTGTCGCCGATATTGGACTCGTGGTGGTGCGCTTCGGAACGTCCCTGTTGGAGGCGGTTGTCGTCGGAATAAGAAGATTAAAACTCGACGCTCGAAGTCTCCGGTAGCTCGGAATGAAACTCAGCTGAATGTTATTGGTGATTTACAGCCTCAAAATCCTCCCCTTTCATTCATGGCTTCACTCAACAATTTTCCTCAATATGGAACAATGAATTTAGGGTTGAATTTCAATGATATTGGAAACGATGCTCTTCAGAATCATCAATGGCGCAGTTTCATGAACTGTCCTATCTCAGGTGGCTTAGAAACCCCAACGGGATGGTACCCAACAAATTCAATCCCAACACCAAATTCAAGAGCGACCCAGTTGCCTTTAGGGAAGATTGAAGATACCCCAAGTGCTGAATTTGTTGAAATCCTCAAATTTGGGTATCAATAA 681 45.52 MDFSSLPLFLDPPPNCLQPSNHVGGGGVSSIRRGSMADRARLANVPLPEMALKCPRCDSTNTKFCYFNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKIKTRRSKSPVARNETQLNVIGDLQPQNPPLSFMASLNNFPQYGTMNLGLNFNDIGNDALQNHQWRSFMNCPISGGLETPTGWYPTNSIPTPNSRATQLPLGKIEDTPSAEFVEILKFGYQ 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 909757 911022 + CmaCh13G001330.1 Cma13g00133 305960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00133 226 Pfam Dof domain, zinc finger 51 106 IPR003851 GO:0003677|GO:0006355
Cma13g00133 226 ProSiteProfiles Zinc finger Dof-type profile. 52 106 IPR003851 GO:0003677|GO:0006355
Cma13g00133 226 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 21 169 - -
Cma13g00133 226 ProSitePatterns Zinc finger Dof-type signature. 54 90 IPR003851 GO:0003677|GO:0006355
Cma13g00133 226 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 169 IPR045174 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00812 Cma13g00133 CCT
Cma02g00812 Cma13g00133 ECH
Cma01g00595 Cma13g00133 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00431 Cma-Chr3:4562700 Cma13g00133 Cma-Chr13:909757 1.44E-44 dispersed
Cma13g00133 Cma-Chr13:909757 Cma15g00398 Cma-Chr15:1778177 3.59E-44 dispersed
Cma01g00595 Cma-Chr1:3123663 Cma13g00133 Cma-Chr13:909757 5.83E-104 wgd
Cma13g00133 Cma-Chr13:909757 Cma14g00157 Cma-Chr14:642222 1.63E-53 wgd
Cma13g00133 Cma-Chr13:909757 Cma02g00812 Cma-Chr2:4795103 1.07E-47 wgd
Cma13g00133 Cma-Chr13:909757 Cma20g00412 Cma-Chr20:1971141 1.54E-46 wgd
Cma13g00133 Cma-Chr13:909757 Cma04g00219 Cma-Chr4:1060358 5.10E-47 wgd
Cma13g00133 Cma-Chr13:909757 Cma04g01188 Cma-Chr4:6067895 1.06E-49 wgd
Cma13g00133 Cma-Chr13:909757 Cma06g00304 Cma-Chr6:1443954 2.04E-48 wgd
Cma13g00133 Cma-Chr13:909757 Cma07g00977 Cma-Chr7:4730534 1.55E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36066 PF02701 zf-Dof 2.80E-33 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00133 - - cmax:111469505 469.544