Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00147 ATGACATACACCATGCAAGAGAGGGAGAAGCGGAAGCCTTTGCTCGTCAAGGATCCTGGAATTTTGGATAAATTGATTTTTCTTTTGGATTTCTGTATCCGCCCAACGTGTTTGCTATTAGAAATGGGTAGAGGGGGGGAAAACTACGGGAAGAAAGACATTTTTGCTGCTACATCTTCGAAGAAAGAAACGTACCCTGCCTGGGCAAGGGATGTTCAAGAATGCGTAGAGAAGTACCAAGTGAATCCAGATCTCGGATTATCTTCTGAAGAGGTCGAAAACAAGAGAAAGATCTATGGTTTCAATGAATTGGAGAAGCATGAAGGTACCTCAATCTGGAAACTTATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCTGCAGCAGTTGTATCTTTTGTTCTTGCATGGTATGATGGTGAGGAAGGTGGTGAGATGGAGATCACCGCATTTGTGGAGCCTCTAGTTATTTTCTTGATACTGATCGTAAATGCCATTGTTGGCATTTGGCAAGAGAACAATGCTGAGAAAGCATTGGAAGCCCTTAAAGAAATCCAGTCTGAACAGGCTTCAGTTATACGAAATGGTAAACGAGTTTCGATTGTTGCAAAAGATCTTGTTCCCGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACATGCGAGTATTGCGTTTAATCAGCTCAACTTTTCGGGTAGAGCAAGGTTCCTTGACAGGCGAGAGTGAAGCGGTGAGCAAGACTGCTAAGGCAGTGCCAGAAGATACCGATATACAAGGGAAAAAGTGTATGGTTTTTGCAGGGACAACAGTTGTCAATGGAAATTGCATTTGCGTTGTTACCCAAATAGGAATGAACACTGAACTAGGACAGGTGCATGCTCAGATACAAGAAGCATCTCAGAGTGAAGATGATACGCCATTGAAGAAAAAGCTGAATGAGTTTGGAGAGCTTCTAACGGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATATGTTGATGGGTGGCCTGCAAATTTCAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCATTGGCTGTAGCTGCAATTCCAGAAGGTTTGCCTGCAGTCATAACAACATGCTTGGCACTTGGCACTCGAAAGATGGCTCAAAAGAATGCCCTTGTTCGGAAGCTGCCCAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACCGGTACTCTAACAACTAATCAGATGGCTGTGGCAAAAATTGTGGCCCTTGGTTCTCGTGTTGGCACTCTGCGAGCTTTTGATGTGGAGGGGACTACATATGATCCTTTAGATGGAAGGATAATTGGTTGGCTTGGAGGTCAACTGGATGCTAATCTACAAATGTTGGCAAAGATCGCTGCTGTCTGTAATGATGCAGGTGTTGAAAAATCTGGCCATCATTTTGTTGCAAATGGAATGCCTACTGAAGCAGCATTGAAGGTTCTGGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGCTGACATTAATGGGGATGTCCTGCGATGCTGCCACGCTTGGAATAAGAACGAGCAACGCATTGCTACTCTAGAGTTTGACCGAGACCGTAAATCCATGGGAGTTATAACAACTTCTAGCTCAGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAAAACCTTTTGGATCGGAGTTCATTTATTCAACTGCTTGATGGAACTATAGTGAAGTTGGACTCAGATTCGAAGAGATGCCTCTTAGATTATTTGCGTGAGATGTCATCAAGTGCACTAAGGTGTTTAGGTTTTGCCTACAAGGAAGATCTTCCAGAATTTTCCACTTATAATAACGGTGATGAAGAACATCCAGCACACCAGCTTCTACTTGACCCGTCCAAATACTCCACAATTGAAAGTAATCTTATCTTTGCGGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTGAAGACTGCAAAGCTGCTGGTATTCGTGTCATGGTTATCACAGGGGACAACCAGAATACAGCTGAAGCTATATGTCGAGAAATAGGCGTATTTGGAAAACATGAAGCTATAAATTCCAGAAGTTTAACTGGAAAAGAGTTCATGGCAATGAATCGGGAGGGTCAAAAACTTCATTTAAGACAAGATGGAGGACTTCTTTTCTCAAGGGCTGAACCAAGACATAAACAAGAGATAGTGAGATTGCTCAAGGAAGACGGTGAAGTTGTTGCAATGACCGGTGATGGAGTCAATGATGCGCCTGCCTTGAAGCTGGCTGATATCGGTATTGCGATGGGCATTGCTGGTACCGAGGTTGCAAAGGAAGCCTCCGACATGGTTCTTGCAGATGACAATTTTAGTACAATAGTTGCAGCGGTTGGTGAAGGCAGGTCCATTTACGACAATATGAAGGCGTTTATCAGGTACATGATTTCCTCGAATATTGGTGAAGTTGCATCAATATTTTTGACAGCAGCACTGGGTATCCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTCGTTACAGACGGACCCCCAGCAACTGCATTGGGATTTAATCCACCAGATAATGATATAATGAAGAAACCGCCAAGAAAGAGTGACGACTCGTTGATCACAGCCTGGATTTTGTTCCGCTATTTGGTGATTGGACTTTACGTAGGGGTAGCAACTGTAGGAGTGTTTATTATTTGGTATACACATGCATCATTCTTGGGCATCGACCTGTCTGGAGATGGTCATAGTCTGGTCTCTTACTCTCAGCTCGCTAACTGGGGTCAGTGCTCATCTTGGGATGGGTTTTCGGTGTCGCCCTTCACAGCTGGGGATGAAGTCTTCAGCTTTGATTCGGATCCATGCGATTACTTCCGCTCAGGCAAGATCAAAGCATCAACACTATCACTCTCCGTCTTGGTAGCCATAGAGATGTTCAATTCCCTCAATGCCCTCTCCGAGGATGGAAGCTTGTTGACAATGCCCCCTTGGGTTAACCCTTGGCTCCTCCTCGCCATGTCTGTTTCGTTCGGCTTGCATTTCTTGATTCTGTATGTGCCATTCCTTGCCAAGATCTTTGGCATCGTCCCGCTGTCGTTGAACGAATGGCTCTTGGTTCTGGCGGTGGCATTGCCCGTGATCATAATCGACGAGATTCTGAAATTCGTGGGAAGGCTTACAAGTGGGTTGAGGACTTCTCACCCGAGGAGATCATCGAAGCAGAAATCAGAGTAA 3321 44.26 MTYTMQEREKRKPLLVKDPGILDKLIFLLDFCIRPTCLLLEMGRGGENYGKKDIFAATSSKKETYPAWARDVQECVEKYQVNPDLGLSSEEVENKRKIYGFNELEKHEGTSIWKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVIRNGKRVSIVAKDLVPGDIVELRVGDKVPADMRVLRLISSTFRVEQGSLTGESEAVSKTAKAVPEDTDIQGKKCMVFAGTTVVNGNCICVVTQIGMNTELGQVHAQIQEASQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGRIIGWLGGQLDANLQMLAKIAAVCNDAGVEKSGHHFVANGMPTEAALKVLVEKMGLPEGYDSSSADINGDVLRCCHAWNKNEQRIATLEFDRDRKSMGVITTSSSGKKSLLVKGAVENLLDRSSFIQLLDGTIVKLDSDSKRCLLDYLREMSSSALRCLGFAYKEDLPEFSTYNNGDEEHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIEDCKAAGIRVMVITGDNQNTAEAICREIGVFGKHEAINSRSLTGKEFMAMNREGQKLHLRQDGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDNDIMKKPPRKSDDSLITAWILFRYLVIGLYVGVATVGVFIIWYTHASFLGIDLSGDGHSLVSYSQLANWGQCSSWDGFSVSPFTAGDEVFSFDSDPCDYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFVGRLTSGLRTSHPRRSSKQKSE 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1081823 1088929 + CmaCh13G001470.1 Cma13g00147 305974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 240 254 - -
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 798 810 - -
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 774 793 - -
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 666 677 - -
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 688 698 - -
Cma13g00147 1106 PRINTS P-type cation-transporting ATPase superfamily signature 421 435 - -
Cma13g00147 1106 SFLD p-type atpase 402 826 IPR044492 -
Cma13g00147 1106 Gene3D - 86 303 - -
Cma13g00147 1106 Gene3D - 431 673 IPR023299 GO:0000166
Cma13g00147 1106 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 428 670 IPR023299 GO:0000166
Cma13g00147 1106 ProSitePatterns E1-E2 ATPases phosphorylation site. 423 429 IPR018303 -
Cma13g00147 1106 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 45 1105 - -
Cma13g00147 1106 Gene3D - 418 819 IPR023214 -
Cma13g00147 1106 Pfam Cation transporting ATPase, C-terminus 859 1085 IPR006068 -
Cma13g00147 1106 Pfam haloacid dehalogenase-like hydrolase 418 788 - -
Cma13g00147 1106 Pfam Cation transporter/ATPase, N-terminus 68 135 IPR004014 -
Cma13g00147 1106 SFLD Haloacid Dehalogenase 402 826 - -
Cma13g00147 1106 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 748 858 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00147 1106 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 159 348 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00147 1106 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 360 442 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma13g00147 1106 SMART Cation_ATPase_N_a_2 66 140 IPR004014 -
Cma13g00147 1106 Gene3D - 118 1087 - -
Cma13g00147 1106 Pfam E1-E2 ATPase 188 401 - -
Cma13g00147 1106 SUPERFAMILY HAD-like 419 878 IPR036412 -
Cma13g00147 1106 SUPERFAMILY Calcium ATPase, transmembrane domain M 66 1087 IPR023298 -
Cma13g00147 1106 PANTHER CALCIUM-TRANSPORTING ATPASE 45 1105 - -
Cma13g00147 1106 SUPERFAMILY Calcium ATPase, transduction domain A 190 300 IPR008250 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00579 Cma13g00147 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00147 Cma-Chr13:1081823 Cma05g00724 Cma-Chr5:4038867 1.99E-109 dispersed
Cma12g00603 Cma-Chr12:3149699 Cma13g00147 Cma-Chr13:1081823 0 transposed
Cma01g00579 Cma-Chr1:3004890 Cma13g00147 Cma-Chr13:1081823 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00147 K01537 - csv:101206729 1996.48