Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00166 ATGAATATTCAAATTTCAAAGTTTCAAACTGTGAAAGACGCGCAAAGTAGAATTCCAGATGAGACGCCGACGCTTTTTCTCCCTCTTCTTCCAATCTTTTTAACGCTCTCCCTCTCTCGCCATTATCACTCAAAGCTTCTTCGTCTCAGATTTTCAGCCATTTGCAGATCTAAGAACATGGAGAACGATTCTTCCGCTATGGAGATTAAAGGGTTTCCCACCTACGACGGGAAGTACTTGCTCTACAACGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACGCCCCTTCGATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAGGAAGAGGTAGCGATAAAGAAGATAGGGAACGCTTTCGATAACCGGATTGATGCCAAGAGGACCCTTCGTGAGATAGAACTCCTATGCCATATGGACCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAAAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATTCGATCTAGCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAATCTGCTTCTCAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTGACACGATGGTATCGAGCGCCTGAGCTTCTACTCAACACTTCCGAATACACTGCAGCGATCGATATTTGGGCTGTTGGATGTATTCTCATGGAAATTCTAAGGAGGGAGCCACTGTTCCCTGGAAAAGACTATGTGCAACAATTGGGGCTTATAACCGAGTTGCTTGGTTCACCAGATGATTCAGATCTCGGGTTTCTTAGAAGTGATAATGCAAGGAAGTACGTTAAGCAACTTCCTCATTTCCCGAAACAACCACTGATTGAAAAGTTCCCAGATCTTCCTCCACTGGCAGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCGATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGAAATAAAAGAGCTTATATGGAGGGCATCTCTCAAGTTCAATCCAAATTACATGTAG 1287 42.74 MNIQISKFQTVKDAQSRIPDETPTLFLPLLPIFLTLSLSRHYHSKLLRLRFSAICRSKNMENDSSAMEIKGFPTYDGKYLLYNVLGNFFEVSAKYAPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIELLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSSQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWAVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPHFPKQPLIEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEEIKELIWRASLKFNPNYM 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1268019 1272226 + CmaCh13G001660.1 Cma13g00166 305993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00166 428 SMART serkin_6 99 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00166 428 ProSiteProfiles Protein kinase domain profile. 96 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00166 428 SUPERFAMILY Protein kinase-like (PK-like) 99 388 IPR011009 -
Cma13g00166 428 ProSitePatterns Protein kinases ATP-binding region signature. 102 126 IPR017441 GO:0005524
Cma13g00166 428 Gene3D Phosphorylase Kinase; domain 1 79 418 - -
Cma13g00166 428 ProSitePatterns MAP kinase signature. 131 234 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cma13g00166 428 Gene3D Transferase(Phosphotransferase) domain 1 180 409 - -
Cma13g00166 428 Pfam Protein kinase domain 99 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00166 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Cma13g00166 428 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 13 74 426 - -
Cma13g00166 428 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 74 426 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00166 Cma-Chr13:1268019 Cma15g01248 Cma-Chr15:7927658 0 dispersed
Cma01g00554 Cma-Chr1:2885039 Cma13g00166 Cma-Chr13:1268019 2.17E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68993 PF00069 Pkinase 4.30E-69 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00166 K04371 - csv:101218403 720.694