Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00169 ATGGGTTGCTTTTGTTGCTTCGGTTCATCGAGCAAGAAACCGGAGAAAATCGAACAAAACAACCCTAACACCTTCAATTCCAAAACTCACAAGCCCGATGATCGAACTCCTTCAGATAAACCCAAAGTAAATTCAAGTTTAGCAGTGAAAAGGGATTCTGATGTGAAGGTTGTTGTGTCTAAAGATGATCAATTAGCTTTAGATGTTAAGAAATTGAATTTGAAAGATGAAGTTTCTGAGGAAGGAGAAACCAATGGCCGTGCTAAGACTTTTACATTTGAAGAACTTAAGGCTGCAACAGGTAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTATAAAGGGTACTTGCAGCAAGTTAGTGAGGTTGTTGCAATCAAACAACTCGACCGCAATGGAGTTCAAGGAATTCGGGAGTTTGTTGTGGAAGTCTTGACTTTAAGTTTAGCTGATCACCCTAACCTTGTTAAACTCATTGGCTTTTGTGCTGAAGGGGATCAGAGGCTGTTGGTTTATGAATATATGCCATTGGGATCTTTGGAAAACCATTTACACGATCTTCGACCCGGTGTAAAGGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAAGGGTTTGGAGTATTTGCATGAGAAGATGAAGCCCCCGGTTATCTATCGTGATCTGAAATGCTCGAACATTTTGCTCGGTGAAGGATATCATCCAAAGCTATCTGATTTCGGATTAGCTAAAGTTGGTCCCAGTGGGGATAAAACCCATGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCACCAGATTACGCAATGACCGGTCAGCTGACGTTCAAATCAGATATTTACAGCTTTGGTGTTGTTTTATTAGAACTCATCACTGGCAGGAAAGCGATCGATCATTCAAAGCCTCATTCGGAACAAAATCTTGTTGCTTGGGCGCGACCATTGTTCAGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCAATGCTTCAAGGACATTATCCTGTGAGAGGATTATACCAATCTCTTGCCATAGCAGCAATGTGTGTTCAGGAGCAACCGAACATGCGTCCAGTTATATCCGACGTGGTTACTGCTTTAAACTACCTAGCCTCCCAGAAATACGATCCTCAAACACAACCAAACCATAGCTCCCAAAAGAGACCACCTTCTCCTAAAATGGAACGGGACGATGATAAGAGGCATACTTCGGACGACGACGAGTCAGAGAGAGAGTGA 1269 42.63 MGCFCCFGSSSKKPEKIEQNNPNTFNSKTHKPDDRTPSDKPKVNSSLAVKRDSDVKVVVSKDDQLALDVKKLNLKDEVSEEGETNGRAKTFTFEELKAATGNFRSDCFLGEGGFGKVYKGYLQQVSEVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGVKVIDWNTRMKIAAGAAKGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPMLQGHYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQTQPNHSSQKRPPSPKMERDDDKRHTSDDDESERE 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1291866 1295491 + CmaCh13G001690.1 Cma13g00169 305996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00169 422 MobiDBLite consensus disorder prediction 13 27 - -
Cma13g00169 422 MobiDBLite consensus disorder prediction 8 46 - -
Cma13g00169 422 MobiDBLite consensus disorder prediction 383 398 - -
Cma13g00169 422 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00169 422 CDD STKc_IRAK 109 378 - -
Cma13g00169 422 MobiDBLite consensus disorder prediction 399 422 - -
Cma13g00169 422 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524
Cma13g00169 422 Gene3D Phosphorylase Kinase; domain 1 71 179 - -
Cma13g00169 422 MobiDBLite consensus disorder prediction 28 46 - -
Cma13g00169 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Cma13g00169 422 MobiDBLite consensus disorder prediction 383 422 - -
Cma13g00169 422 PANTHER OS07G0668900 PROTEIN 1 411 - -
Cma13g00169 422 SUPERFAMILY Protein kinase-like (PK-like) 89 398 IPR011009 -
Cma13g00169 422 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 411 - -
Cma13g00169 422 Pfam Protein kinase domain 108 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00169 422 Gene3D Transferase(Phosphotransferase) domain 1 180 400 - -
Cma13g00169 422 SMART serkin_6 103 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00169 Cma-Chr13:1291866 Cma14g01637 Cma-Chr14:12259054 1.24E-180 dispersed
Cma13g00169 Cma-Chr13:1291866 Cma14g00183 Cma-Chr14:761708 5.19E-180 wgd
Cma13g00169 Cma-Chr13:1291866 Cma20g00451 Cma-Chr20:2135318 6.06E-173 wgd
Cma13g00169 Cma-Chr13:1291866 Cma04g00257 Cma-Chr4:1266414 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68994 PF00069 Pkinase 8.00E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00169 - - bhj:120083806 794.653