Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g00185 | ATGTCACCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGTGAGATATGCAAAAAGGGGTTTCAAAGAGACCAGAATTTGCAGCTCCACCGGCGAGGGCACAACCTGCCATGGAAGCTCCGGCAGAGGACAAGCAACGAGGTGAGGAAGAAGGTGTATGTGTGCCCGGAGAAGAGTTGTGTTCACCACGACTCGTCGAGAGCGCTCGGCGACCTCACCGGAATCAAGAAACACTACAGCCGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCTGTTCAGTCGGATTGGAAGGCTCATTCCAAAATTTGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATCACTCACAGAGCATNTTGTGATGCATTAGCAGAAGAAAATTCAAGAATCTCCACAGTTTCAACTCTAAATCATCATCCAACCTTCATCAACAACTTTTCTCCTTCTCCTTCTTCTTCTTCACTAATTTTCCGGCCAAACTTCGCCACCACCACCGTGAATCACTCCAATGTTATCTCTGACCATGGCGGCGACGACCACAAGCCCCGGCAACTGCCACTGTCGCCGCCGCCGCCGCAGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCTGAGCAGCTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCCGCTCAAATGGGGCCCACCAGAACGCCCTCCACGCCGCCAATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCCCTACCGCCGCCTTGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTGGCGCAAAAGAAGAAATTGGAGCGCAGAATTTAACCAGAGACTTCCTCGGCGTTGGAAATCAGGTGGTGCATCTCACGCCGGCGGGATCCAATCAATACAGTGATCAAAGCCGCCGCCATTAG | 1077 | 52.37 | MSPKSLMAKNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKKVYVCPEKSCVHHDSSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAXCDALAEENSRISTVSTLNHHPTFINNFSPSPSSSSLIFRPNFATTTVNHSNVISDHGGDDHKPRQLPLSPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEQLTTTSSYPPPPHMSATALLQKAAQMGPTRTPSTPPILFNNTTAVTAYGMNNSAAPTAALSDGRPMMKPIMGGAKEEIGAQNLTRDFLGVGNQVVHLTPAGSNQYSDQSRRH | 358 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1415374 | 1417612 | - | CmaCh13G001850.1 | Cma13g00185 | 306012 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g00185 | 358 | MobiDBLite | consensus disorder prediction | 200 | 218 | - | - | |
| Cma13g00185 | 358 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 14 | 34 | IPR013087 | - | |
| Cma13g00185 | 358 | SMART | c2h2final6 | 12 | 34 | IPR013087 | - | |
| Cma13g00185 | 358 | SMART | c2h2final6 | 88 | 108 | IPR013087 | - | |
| Cma13g00185 | 358 | SMART | c2h2final6 | 53 | 83 | IPR013087 | - | |
| Cma13g00185 | 358 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 13-RELATED | 1 | 340 | - | - | |
| Cma13g00185 | 358 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 340 | - | - | |
| Cma13g00185 | 358 | MobiDBLite | consensus disorder prediction | 184 | 231 | - | - | |
| Cma13g00185 | 358 | SUPERFAMILY | beta-beta-alpha zinc fingers | 11 | 108 | IPR036236 | - | |
| Cma13g00185 | 358 | Gene3D | Classic Zinc Finger | 8 | 35 | - | - | |
| Cma13g00185 | 358 | Gene3D | Classic Zinc Finger | 46 | 136 | - | - | |
| Cma13g00185 | 358 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 12 | 34 | IPR013087 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma13g00185 | Cma-Chr13:1415374 | Cma06g00370 | Cma-Chr6:1719002 | 1.87E-99 | dispersed | |
| Cma13g00185 | Cma-Chr13:1415374 | Cma14g00204 | Cma-Chr14:883176 | 7.30E-100 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36069 | None | None | None | None | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g00185 | K25870 | - | csv:101212420 | 507.294 |