Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00185 ATGTCACCAAAGTCTCTAATGGCGAAGAATAGATTCATTTGTGAGATATGCAAAAAGGGGTTTCAAAGAGACCAGAATTTGCAGCTCCACCGGCGAGGGCACAACCTGCCATGGAAGCTCCGGCAGAGGACAAGCAACGAGGTGAGGAAGAAGGTGTATGTGTGCCCGGAGAAGAGTTGTGTTCACCACGACTCGTCGAGAGCGCTCGGCGACCTCACCGGAATCAAGAAACACTACAGCCGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCTAAGAAGTATGCTGTTCAGTCGGATTGGAAGGCTCATTCCAAAATTTGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTCTCCAGGAAGGATAGCTTCATCACTCACAGAGCATNTTGTGATGCATTAGCAGAAGAAAATTCAAGAATCTCCACAGTTTCAACTCTAAATCATCATCCAACCTTCATCAACAACTTTTCTCCTTCTCCTTCTTCTTCTTCACTAATTTTCCGGCCAAACTTCGCCACCACCACCGTGAATCACTCCAATGTTATCTCTGACCATGGCGGCGACGACCACAAGCCCCGGCAACTGCCACTGTCGCCGCCGCCGCCGCAGCTCCCTCTCTGGCTCGACCCTCCACAAAATCCCAACCCCTTTTTCTCCACCGCCTTCTCCGACCACCCTCCATTATTCTTGCCGGAAAATCAGCAATCTTTCTTTTCTGAGCAGCTAACGACGACCTCCTCGTACCCGCCGCCACCCCACATGTCCGCCACCGCGCTCCTCCAGAAAGCCGCTCAAATGGGGCCCACCAGAACGCCCTCCACGCCGCCAATTCTCTTCAACAACACCACCGCCGTCACAGCATATGGAATGAACAACTCCGCCGCCCCTACCGCCGCCTTGTCGGATGGCCGTCCGATGATGAAGCCGATAATGGGTGGCGCAAAAGAAGAAATTGGAGCGCAGAATTTAACCAGAGACTTCCTCGGCGTTGGAAATCAGGTGGTGCATCTCACGCCGGCGGGATCCAATCAATACAGTGATCAAAGCCGCCGCCATTAG 1077 52.37 MSPKSLMAKNRFICEICKKGFQRDQNLQLHRRGHNLPWKLRQRTSNEVRKKVYVCPEKSCVHHDSSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAXCDALAEENSRISTVSTLNHHPTFINNFSPSPSSSSLIFRPNFATTTVNHSNVISDHGGDDHKPRQLPLSPPPPQLPLWLDPPQNPNPFFSTAFSDHPPLFLPENQQSFFSEQLTTTSSYPPPPHMSATALLQKAAQMGPTRTPSTPPILFNNTTAVTAYGMNNSAAPTAALSDGRPMMKPIMGGAKEEIGAQNLTRDFLGVGNQVVHLTPAGSNQYSDQSRRH 358
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 1415374 1417612 - CmaCh13G001850.1 Cma13g00185 306012
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00185 358 MobiDBLite consensus disorder prediction 200 218 - -
Cma13g00185 358 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Cma13g00185 358 SMART c2h2final6 12 34 IPR013087 -
Cma13g00185 358 SMART c2h2final6 88 108 IPR013087 -
Cma13g00185 358 SMART c2h2final6 53 83 IPR013087 -
Cma13g00185 358 PANTHER PROTEIN INDETERMINATE-DOMAIN 13-RELATED 1 340 - -
Cma13g00185 358 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 340 - -
Cma13g00185 358 MobiDBLite consensus disorder prediction 184 231 - -
Cma13g00185 358 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
Cma13g00185 358 Gene3D Classic Zinc Finger 8 35 - -
Cma13g00185 358 Gene3D Classic Zinc Finger 46 136 - -
Cma13g00185 358 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00185 Cma-Chr13:1415374 Cma06g00370 Cma-Chr6:1719002 1.87E-99 dispersed
Cma13g00185 Cma-Chr13:1415374 Cma14g00204 Cma-Chr14:883176 7.30E-100 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36069 None None None None Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00185 K25870 - csv:101212420 507.294