Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00188 ATGGCGGCGGCAGGCGGTGGCAAGTCGCTCGAGCAAACGCCGACGTGGGCAGTGGCCGTCGTCTGCTTCATCTTACTCTTCATCTCCATCGTCATCGAATATATAATCCACCTCATCGGACAGTGGCTGAAGAAGAGACACAAACGAGCTTTATTTGAAGCTCTTGAGAAGATCAAATCAGAGCTTATGTTATTGGGATTCATATCACTGCTTTTAACTGTCGGGCAAGGTCCGATCTCTGATATATGTATTCCTGAACACGTGGCTGCCACGTGGCATCCTTGTACGAAGGAGAAAGAAGCGAAGATGAATGAAGATATGGAGAAATCCGTGGAACATTTGGCTAATAATGGCTGGAGACTTCTCCATCTGAACGGAACTGGTGGAAGTTTCCGGCGGGTTTTGGCCGCGCCTGGTGGAGCCGACAAGTGTGCTGCCAAGGGTTTAGTGTCGTTTATTTCAGCGGAAGGAATTCATCAACTTCATATCTTCATATTTGTGTTGGCTGTTTGCCATGTTTTGTATTGTGTTCTAACTTATGCTTTGGCTAGAGCAAAGATGAGGAGTTGGAAAACATGGGAAAAAGAAACCAAAACGGCGGAATACCAATTCTCACACGATCCCGAGAGATTTAGGTTTGCAAGAGACACCTCGTTCGGGAGAAGACATCTAAATTTCTGGACGAAGAATTCTGCCCTAATGTGGATAGTTTGTTTCTTCCGACAATTTGTAAGATCGGTTCCAAAAGTTGATTACCTGACATTACGACATGGATTTATAATGGCACATTTAGCTCCTCAAAGTCATACACAATTCGATTTCCAAAAGTACATTAATCGTTCCCTTGAAGAAGACTTCAAAGTGGTTGTTGGAATCAGCCCACCAATCTGGTTCTTCGCTGTGCTATTCCTCCTCTCAAACACCCACGGTTGGAGGGCATATCTATGGCTGCCATTCATCCCATTAATCATTCTGCTGCTGATCGGGACGAAGTTGCAGGTGATCATAACGAAGATGGCGCTGAGAATACAAGAGCGAGGGGAAGTGGTGAAGGGCGTGCCGGTGGTGGAGCCTGGCGATGACCTGTTCTGGTTCAATCGCCCTCGCCTCATTCTTTATCTTATTAACTTCGTTCTCTTTCAAAACGCCTTCCAAGTTGGCTTTTTTGCTTGGACTTGGTATGAGTTCGGGCTGAATTCTTGTTTCCACGAACATGTAGAGGATGTGGTGATCAGAATCTCAATGGGGGTGATTGTACAGATCCTTTGCAGCTATGTAACTCTACCTCTTTATGCATTGGTAACTCAGATGGGTTCAACAATGAAGCCAACTATATTCAATGAGAGAGTGGCAGCTGCCCTTCGAAATTGGTACCACACGGCTCGAAAGCACATCAAACACAACCGTGGTTCGATCACCCCAATGTCGAGCCGACCCACCACTCCGACTCACCACATGTCACCAGTTCACCTTCTTCGACATTACAAGAGTGAGGTCGATAGCTTCCATAACTCGCCGAGAAGGTCACCAGTTGAACATGATCGTTGGGACAATGATTCGCCGTCCCCCTCTCGTCACGCTGATGGTTCGTCCTCGTCACAGCCCCATGTTGAGATGGGAGGCTATGACAAAGATCCAATTGAACTGGGTTTGACTGAAGTTAACCCTGTTCGACCGTCTCGAACGCGCACTCAACATGAGATTGATATTGGTCATAAAGACTTTTCGTTTGATAGAATTGAATGA 1746 46.39 MAAAGGGKSLEQTPTWAVAVVCFILLFISIVIEYIIHLIGQWLKKRHKRALFEALEKIKSELMLLGFISLLLTVGQGPISDICIPEHVAATWHPCTKEKEAKMNEDMEKSVEHLANNGWRLLHLNGTGGSFRRVLAAPGGADKCAAKGLVSFISAEGIHQLHIFIFVLAVCHVLYCVLTYALARAKMRSWKTWEKETKTAEYQFSHDPERFRFARDTSFGRRHLNFWTKNSALMWIVCFFRQFVRSVPKVDYLTLRHGFIMAHLAPQSHTQFDFQKYINRSLEEDFKVVVGISPPIWFFAVLFLLSNTHGWRAYLWLPFIPLIILLLIGTKLQVIITKMALRIQERGEVVKGVPVVEPGDDLFWFNRPRLILYLINFVLFQNAFQVGFFAWTWYEFGLNSCFHEHVEDVVIRISMGVIVQILCSYVTLPLYALVTQMGSTMKPTIFNERVAAALRNWYHTARKHIKHNRGSITPMSSRPTTPTHHMSPVHLLRHYKSEVDSFHNSPRRSPVEHDRWDNDSPSPSRHADGSSSSQPHVEMGGYDKDPIELGLTEVNPVRPSRTRTQHEIDIGHKDFSFDRIE 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1437806 1443053 - CmaCh13G001880.1 Cma13g00188 306015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00188 581 MobiDBLite consensus disorder prediction 523 537 - -
Cma13g00188 581 Pfam Mlo family 8 495 IPR004326 GO:0006952|GO:0016021
Cma13g00188 581 PANTHER MLO-LIKE PROTEIN 1 2 578 IPR004326 GO:0006952|GO:0016021
Cma13g00188 581 MobiDBLite consensus disorder prediction 560 581 - -
Cma13g00188 581 MobiDBLite consensus disorder prediction 501 581 - -
Cma13g00188 581 PANTHER MLO-LIKE PROTEIN 2 578 - -
Cma13g00188 581 Coils Coil 97 117 - -
Cma13g00188 581 MobiDBLite consensus disorder prediction 501 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00188 Cma-Chr13:1437806 Cma18g00888 Cma-Chr18:7659471 0 dispersed
Cma13g00188 Cma-Chr13:1437806 Cma13g00190 Cma-Chr13:1471150 2.77E-155 proximal
Cma01g00538 Cma-Chr1:2790988 Cma13g00188 Cma-Chr13:1437806 1.21E-158 wgd
Cma13g00188 Cma-Chr13:1437806 Cma02g00883 Cma-Chr2:5245432 0 wgd
Cma13g00188 Cma-Chr13:1437806 Cma20g00477 Cma-Chr20:2307515 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00188 K08472 - csv:101217225 1051.2