Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g00195 | ATGGACGCAAAATCCAGCCCAACTTCAACCATCTTCCGTTCTCAGTCGCCGTCGTCGTCCCCATTACCGCCGCCGCCGAGTGTTCAGGCCGGCTTGGTGGTCAGTCCGTGTGCTGCGTGCAAGACTCTGAGGCGGAGATGCACAGAGAAATGCGTATTGGCGCCCTATTTCCCTCCCTCTGATCCACTCAAGTTTACCATTGCTCACCGTATCTTTGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGAATCACAGAGAATTGATGCAGTGAGTAGCTTGGTATACGAAGCAAGCGCAAGAATCAGAGATCCAGTATATGGATGTGCAGGGGCCATTTCCCAGCTCCAAAAACAAATAAACGAACTGCAAGCAGAGCTAGCCAAAACACAGGCTGAGCTTGTCAACATCCACAGCCACCAAACAAATTTGGTGGCTCTAATTTGCAAGGAACTAGCTCAAACACCACCACCGGTGTCACCCCCAGACCACCACGCTCTCGACAACAATCTCAACACTGCCATTCCTCAGAGCTACACAAATTTGTTTGAAGATAGCAGTATTTGGGAGCCTCTTTGGACATGA | 591 | 50.08 | MDAKSSPTSTIFRSQSPSSSPLPPPPSVQAGLVVSPCAACKTLRRRCTEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLQDLPESQRIDAVSSLVYEASARIRDPVYGCAGAISQLQKQINELQAELAKTQAELVNIHSHQTNLVALICKELAQTPPPVSPPDHHALDNNLNTAIPQSYTNLFEDSSIWEPLWT | 196 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 1537977 | 1539642 | - | CmaCh13G001950.1 | Cma13g00195 | 306022 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g00195 | 196 | Coils | Coil | 115 | 142 | - | - | |
| Cma13g00195 | 196 | ProSiteProfiles | LOB domain profile. | 35 | 136 | IPR004883 | - | |
| Cma13g00195 | 196 | Pfam | Lateral organ boundaries (LOB) domain | 36 | 133 | IPR004883 | - | |
| Cma13g00195 | 196 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cma13g00195 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 17 | 195 | - | - | |
| Cma13g00195 | 196 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cma13g00195 | 196 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 17 | 195 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g01242 | Cma-Chr4:6371441 | Cma13g00195 | Cma-Chr13:1537977 | 5.02E-73 | dispersed | |
| Cma13g00195 | Cma-Chr13:1537977 | Cma15g00433 | Cma-Chr15:1939997 | 2.36E-62 | dispersed | |
| Cma01g00534 | Cma-Chr1:2764711 | Cma13g00195 | Cma-Chr13:1537977 | 5.09E-105 | wgd | |
| Cma13g00195 | Cma-Chr13:1537977 | Cma02g00871 | Cma-Chr2:5081153 | 6.70E-71 | wgd | |
| Cma13g00195 | Cma-Chr13:1537977 | Cma20g00467 | Cma-Chr20:2255365 | 1.89E-71 | wgd | |
| Cma13g00195 | Cma-Chr13:1537977 | Cma04g00272 | Cma-Chr4:1334411 | 6.25E-72 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 36070 | PF03195 | LOB | 1.30E-40 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g00195 | - | - | csv:101222262 | 304.679 |