Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00206 ATGATTGTATCAGCAACGCCGAGCTCCAATGCCGGAATCGGGAGTGGAGAGCTTGGCAGTTTTGTCCGACAAGTGGTGGCGGGGCGGTGGTTTTCTCTTTTCGCTTCGTTTCTTGTTATGGCCGGCGCCGGCGGAGTTTATTTGTTTGCTTATTACTCTACAGACATCAAAACGACGCTCCAATGCGACCAAACGACGCTCAACAAGATTGGGTTTTACAAAGACCTGGGATCCAATGTTGGCATTGTCGCCGGCCTTCTGGCGGAGGTGGCGCCGACTTGGGTCCTTCTCCTCATCGGCGCCGCCTTGAACTTCGTCGGCTATTTCAAGATATGGCAAGGCGTCACCGGGAAAATTGTCAGCCCCACCGTCGCGTATTTTTGCTTTTACATTATGGTCGGAGCAAACTCTCAGAATTTCGCCAATACAGGCGTGCTAGTCACGTGCGTGAAGAACTTCCCGGAAAGACGAGGGGTAATGCTGGGGCTTGCGAAGGGGTTCGTGGGTCTAAGCGGAGCAATCATGACCCAAATTTACACCGCCATTTACGGCGACGATACCAGGTCGCTAATTCTGCTACTCGGCTGGCTCCCTTCTTTAATCTCTTTGATTTTCATCTCCACCATCAGAGAAATCAAAGCCGTCAAACACCCAAACGAGTTCAGAGTCTTCGTCCACTTCCTCTGCGTCTCCGTCATTCTCGCTCTGTTTCTCGCCGCCTTGATCTTCATCCAGAAACGAATCCGATTCGACCAATCCGCCCACGCCGCCGTCGTCGCCGCCATCGCGGCTCTGCTTCTTCTCCCCTTGTTAATCGCCATTAGAGAAGAAATCGTTCTATGGAATCTCAACAAACGGACGATCGGGATCCACCCGCCGCAAGCATCCCCCAATCCTCCTCCCTCTTCCTCCAACAAACCCTCAAGAGGAGAAGACCACACCATTCCTCAAGCCATTTTCAGCGCCGATATGCTCATCTTATGCATCACCATGCTAATCGGCGTCGGCGCTAGCTTGACCGCCATCGACAATCTCCGCCAGATCGGTGAATCCCATGGCTACCCATCTGAAACAATCAACTCGCTCATCGTTCTGGTTAGTATTTTCAACTTCACCGGAAGAATCTTTTCTGGGTTTGTCTCTGACATTCTACTCGAGAAATTCAAATTCCCAAGGCCATTAATGCTCACGCTTGTCCTCTTGGTCTCCTGCGTCGGCCATCTTTTGGTAGCCTTCCCCTTCCATGGTTCGCTGTACATTGCATCCATTGTTATTGGGTTTTCATTGGGCGCTCAAGTCCCATTGCATTTCGCCATGATTTCTGAGCTTTTTGGGTTGAAACATTACTCCACCTTGTTTAATTTTGGGCAATTGTCTTGCCCAATTGGGTCTTATATTCTGAATGTGATGGTCACTGGGAGGCTCTATGATGAGATGGCGAAGGCCACCAGTGGTATAGGCGGCCTTCATTGCGAAGGCCATTCTTGTTATGAACAGTCGTTCGTAATTTTAGCTGGGTTGACGTTCTTTGTAGCGTTGGTGTCGTTGATTTTGGTGGGGAGGACGAGGGAGTTTTATAGAGGGGATATATACAAGAAGTTTAGGGAAGATATGGAGTCTTTGAAGACGAAAATGGAGTTTTATACTCTCGATGACAAGAGGACTAGGATTGGGAATTTACTTGTTGACAAACACAGCATTAATTTCAAGTCGTGA 1716 49.36 MIVSATPSSNAGIGSGELGSFVRQVVAGRWFSLFASFLVMAGAGGVYLFAYYSTDIKTTLQCDQTTLNKIGFYKDLGSNVGIVAGLLAEVAPTWVLLLIGAALNFVGYFKIWQGVTGKIVSPTVAYFCFYIMVGANSQNFANTGVLVTCVKNFPERRGVMLGLAKGFVGLSGAIMTQIYTAIYGDDTRSLILLLGWLPSLISLIFISTIREIKAVKHPNEFRVFVHFLCVSVILALFLAALIFIQKRIRFDQSAHAAVVAAIAALLLLPLLIAIREEIVLWNLNKRTIGIHPPQASPNPPPSSSNKPSRGEDHTIPQAIFSADMLILCITMLIGVGASLTAIDNLRQIGESHGYPSETINSLIVLVSIFNFTGRIFSGFVSDILLEKFKFPRPLMLTLVLLVSCVGHLLVAFPFHGSLYIASIVIGFSLGAQVPLHFAMISELFGLKHYSTLFNFGQLSCPIGSYILNVMVTGRLYDEMAKATSGIGGLHCEGHSCYEQSFVILAGLTFFVALVSLILVGRTREFYRGDIYKKFREDMESLKTKMEFYTLDDKRTRIGNLLVDKHSINFKS 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1630082 1631998 + CmaCh13G002060.1 Cma13g00206 306033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00206 571 Gene3D MFS general substrate transporter like domains 320 526 IPR036259 -
Cma13g00206 571 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 542 - -
Cma13g00206 571 SUPERFAMILY MFS general substrate transporter 21 215 IPR036259 -
Cma13g00206 571 Pfam Major Facilitator Superfamily 327 522 IPR011701 GO:0022857|GO:0055085
Cma13g00206 571 Pfam Nodulin-like 29 274 IPR010658 -
Cma13g00206 571 MobiDBLite consensus disorder prediction 291 311 - -
Cma13g00206 571 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 14 542 - -
Cma13g00206 571 Coils Coil 531 551 - -
Cma13g00206 571 SUPERFAMILY MFS general substrate transporter 227 524 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00525 Cma-Chr1:2719676 Cma13g00206 Cma-Chr13:1630082 0 dispersed
Cma13g00203 Cma-Chr13:1611066 Cma13g00206 Cma-Chr13:1630082 0 dispersed
Cma13g00204 Cma-Chr13:1615738 Cma13g00206 Cma-Chr13:1630082 0 dispersed
Cma13g00206 Cma-Chr13:1630082 Cma13g00226 Cma-Chr13:1767532 0 dispersed
Cma13g00205 Cma-Chr13:1625521 Cma13g00206 Cma-Chr13:1630082 0 tandem
Cma13g00206 Cma-Chr13:1630082 Cma13g00207 Cma-Chr13:1638975 8.14E-115 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00206 - - csv:101202941 861.292