Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00214 ATGGGCAACAAGGGAGGATCAGAAGCTTGGGGTTTCATCAAACAAGTGGTAGCAGGACGATGGTTTAGTGTATTCGCGGGACTGATAATGATGATCGGCAACGGCACCACTTACGTGTTTCCAACATATTCCAAAGTCATAAAAACCCAATTTGATTACAGCCAAACCCAAATTAACACATTGGGATTCGCCAAAGATCTCGGGTCGAACATCGGAATTATCGCCGGGCTTCTGGCGGAGGTGACTCCGACGTGGGTTCTCTTCATAATTGGGGCATTTCAAAACTTCATCGGCTTCTTCTTGATTTGGCTCTCCATAACTGCCCGGATCGCCAAGCCAAAATTCTGGCAAATGTTCATTCTGGTTTGCTTCGGTACTAATTCTTCAAATTGGGCCAACACTGCCATTATGGTGACGAGCGTGAGAAACTTCCCCGACCGACGAGGGATCATTTTGGGTCTTCTTAAAGGGTATGTGGGTATTGGAGGAGCCATCATGAGCCAATTTTATTTAGCCATTTACGGCCACAATGATCCATCCAATCTGGTTCTTCTTTTCGCATGGCTCCCCTCTCTCCTAATCCTCATCCTTTTCCCCTCAATTCGACCAATCCGTATCCGTAAGCATCCCAATGAACTCAAAGTGTTTTACCAGTTACTTTACGTCTCAATTCTTTTGGCCATTTTCATCTTGTTTTTAACCATTGCACAAAAGCAAGTGGTTTTCTCTCAAGCTGGGTACGTAGGTGGCGCATCCTTCGTGGTTTCCTTACTGTGCGTACCCATTTTAATCGCATGTAGAGAAGAGTTGCTGCTCTACAAACTCAACAAACAAACCGCTGGTCCTTCTGTCACAGTCTCCATGGTTCACCAAAACCCTCCCACCCTCCCCGCCTCTGCCGACTCGGAAATCCCCGAGATTTCGCCCTCGTGTTGCGAAAACATATGGAACAAGCCTGAAAGAGGGGAGGATTTCACCATCTTGCAAGCCGTGTTCAGCAAAGATATGGCTCTTATTTGCTTAGCTACATTTTCTGGATGTGGGTCATCTCTAGCCGCTATAGATAATCTAGGTCAAGTTGGGGAATCACTTGGCTACCCACAACGAGCCATAGGCATCCTTGTTTCATGGGTTTCCATATTCAATTTCTTCGGCCGAGTTTTCTCTGGCTTCATCTCAGAAACCCTGATGACCAAATACAAGTTACCTCGTCCTCTAACCTTCTCTTTTGCCTTTCTCATCACTTGCGTTGGCCAGCTTTTCATCGCCTACCCTTTCCCAGGCTCCGTCTACTTAGCTGCCATAATTATTGGGTTTGGATTTGGAGCTCAAAATCCAATGCTATTTGCCGTAATATCTGAGATGTTTGGTCTGAGACGTTACTCGACGTTGTTCAATTGTGGGCAATTGGCAGTCCCACTTGGGTCTTACATACTGAACGTGGATGTTGTCGGGAAGCTGTACGATATGGAAGCTTTGCGTGAAGGTAAGAAGATTGCGGGGAAGGGCTTAACTTGCACGGGAGCTCATTGCTTTGGTGGGTCTTTCACAATATTGGCTGCAGCGACATTGTTTGGAGCTGTGGTTATGTTGGTGTTGGCTTACCGGACTCGAGAATTCTACAAAAGGGATGTGTATAAGAACTTTAACGAGGAGATATGGATTCCACAAACCCAAATGGAGTTCTATCGCTTAGATAGCAAGAAGAGCATTGAGGATTAA 1722 45.99 MGNKGGSEAWGFIKQVVAGRWFSVFAGLIMMIGNGTTYVFPTYSKVIKTQFDYSQTQINTLGFAKDLGSNIGIIAGLLAEVTPTWVLFIIGAFQNFIGFFLIWLSITARIAKPKFWQMFILVCFGTNSSNWANTAIMVTSVRNFPDRRGIILGLLKGYVGIGGAIMSQFYLAIYGHNDPSNLVLLFAWLPSLLILILFPSIRPIRIRKHPNELKVFYQLLYVSILLAIFILFLTIAQKQVVFSQAGYVGGASFVVSLLCVPILIACREELLLYKLNKQTAGPSVTVSMVHQNPPTLPASADSEIPEISPSCCENIWNKPERGEDFTILQAVFSKDMALICLATFSGCGSSLAAIDNLGQVGESLGYPQRAIGILVSWVSIFNFFGRVFSGFISETLMTKYKLPRPLTFSFAFLITCVGQLFIAYPFPGSVYLAAIIIGFGFGAQNPMLFAVISEMFGLRRYSTLFNCGQLAVPLGSYILNVDVVGKLYDMEALREGKKIAGKGLTCTGAHCFGGSFTILAAATLFGAVVMLVLAYRTREFYKRDVYKNFNEEIWIPQTQMEFYRLDSKKSIED 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1702706 1704427 - CmaCh13G002140.1 Cma13g00214 306041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00214 573 Gene3D MFS general substrate transporter like domains 18 210 IPR036259 -
Cma13g00214 573 Gene3D MFS general substrate transporter like domains 335 543 IPR036259 -
Cma13g00214 573 Pfam Nodulin-like 20 265 IPR010658 -
Cma13g00214 573 SUPERFAMILY MFS general substrate transporter 21 539 IPR036259 -
Cma13g00214 573 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 4 552 - -
Cma13g00214 573 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 552 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00212 Cma-Chr13:1676478 Cma13g00214 Cma-Chr13:1702706 0 dispersed
Cma13g00214 Cma-Chr13:1702706 Cma13g00219 Cma-Chr13:1727164 0 dispersed
Cma13g00213 Cma-Chr13:1691448 Cma13g00214 Cma-Chr13:1702706 0 tandem
Cma13g00214 Cma-Chr13:1702706 Cma13g00215 Cma-Chr13:1708400 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00214 - - csv:101204150 872.848