Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00215 ATGAATCGTCCATTAGTTCAGCTAATGACCATGGGCGACAACCGTGAAACAGAAAGTTGGCTATTCGTGAAACAAGTTGTTGAAGGACGATGGTTTTCAGTGTTCACCTCTTTTCCGATCATGATCGGCTGCGGTTCACCTTACTTGTTCGGAACATACTCCAAACTCTTAAAAACAAAATTTGACTACAATCAAACCCAACTTAATACCTTGGGATTCGCTAAAGATCTCGGCTCCAACCTCGGAGTTTTTGCCGGTCTTTTCGCCGAGGTGGCTCCTCCGTGGATGCTTTTCCTTGTGGGGATATCCTCCAATTTCTTCAGCTACTTTATGATTTGGCTCTCCGTTTCTAACTACGTCCCAAAACCCCATTTATGGCTAATGTTTGTTTACATTTATATTACTTCTAATTCACAGAACTTCCCCAACACCGCCGTTGTGGTCACTAGCGTTGGAAATTTTCCTGATCAACGCGGTATCATTTTGGGTCTTCTCAAGGGTTTCGTTGGCCTCGGTGGGGCCATCCTAACTCAAATTAATTTAGCAATTTACGGCAGCCAAAATTCTATCGATCTTTTCCTCCTTCTTTCATGGCTACCCTCCATTGTATGTTTCTTGTGTTTTCTTCCAATTCGGACAATCAAAGCTCGGAAGCATCCACAGGAGCTCAAAGTGTTCTACCACTTGCTTTACGTGTCCATAGCGATAGCGGTGTTCCTCTTGTTTCTCACCATAACCCAGAGAAACATTGCTTTCTCTCAGGCTGGCTATGCTGGTGGCGTCGCGGTCATCGTCGTCTTAATCTGTCTGCCCCTTCTGATAGCTATTAAAGAAGAACTTTCTCTCTTTAAACTCGGTAAACAAACCATGAATCCTTCTGTTCTTGTTTCGATTCCCCGTGAACCACTTGAGCAAATTTCAAAAATTTCTTTGCCGAGCGTCTCGAATGTATGTAAGGGGCCGCAAAGAGGAGAAGATTTCAGCATCTTGCAAGCTCTTCTAAGCAAAGATATGACTCTTATTTTCATAGCAACGATTTCTGCATGTGGATCATCCGTCGCTGCCATTGACAATCTTGGGCAGATTGCCGAGTCACTAAAATATCCAAATCATTCCATGAGCATACTGGTTTCATGGATTTCCATATTCAATTTCTTTGGTCGGGTCTTCTCCGGTTTCATCTCTGAAACCCTTATGACCAAATACAAATTACCTCGCCCTTTCATGTTCGGTCTTACCCAACTTTTCACCTGCACCGGCTTGCTCTCCATCGCATTCCCTTATGTAAATTCAGTCTATGTAGCTTCGTTGATCATTGGGTTTGGCCTTGGAGCCCAAACTCCATTGATATTCGCCATAATCTCTGATCTCTTCGGCCTCAAACATTACTCGACACTGCTCAACTGTGGGCAACTGGCTGTCCCACTTGGATCTTATATAATGAACGTGGAAGTAATAGGGAGGTTTTACGATGCAGAAGCCACTAAAATTGGAAATGTGAAGAACGGAAAGGGCCTAACTTGCACTGGAACTCATTGCTTTGGTGAATCGTTCATGATTTTGGCTACACTGACTTTGTTTGGAGCGATGGCTTCGTTTGTGCTAGCTTATAGAACTCGAGACTTCTACAAAGGCGATGTTTATAAGAAATACAGAGATGACATAGAGGTTGCACAGTCGAACGTGGAATTATATTCTTCCGATGATAAGAACAATGAACACAAAAAGAAAACTGATGATCCAATTAAATAA 1752 42.92 MNRPLVQLMTMGDNRETESWLFVKQVVEGRWFSVFTSFPIMIGCGSPYLFGTYSKLLKTKFDYNQTQLNTLGFAKDLGSNLGVFAGLFAEVAPPWMLFLVGISSNFFSYFMIWLSVSNYVPKPHLWLMFVYIYITSNSQNFPNTAVVVTSVGNFPDQRGIILGLLKGFVGLGGAILTQINLAIYGSQNSIDLFLLLSWLPSIVCFLCFLPIRTIKARKHPQELKVFYHLLYVSIAIAVFLLFLTITQRNIAFSQAGYAGGVAVIVVLICLPLLIAIKEELSLFKLGKQTMNPSVLVSIPREPLEQISKISLPSVSNVCKGPQRGEDFSILQALLSKDMTLIFIATISACGSSVAAIDNLGQIAESLKYPNHSMSILVSWISIFNFFGRVFSGFISETLMTKYKLPRPFMFGLTQLFTCTGLLSIAFPYVNSVYVASLIIGFGLGAQTPLIFAIISDLFGLKHYSTLLNCGQLAVPLGSYIMNVEVIGRFYDAEATKIGNVKNGKGLTCTGTHCFGESFMILATLTLFGAMASFVLAYRTRDFYKGDVYKKYRDDIEVAQSNVELYSSDDKNNEHKKKTDDPIK 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1708400 1711531 - CmaCh13G002150.1 Cma13g00215 306042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00215 583 Pfam Nodulin-like 30 276 IPR010658 -
Cma13g00215 583 SUPERFAMILY MFS general substrate transporter 15 219 IPR036259 -
Cma13g00215 583 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 558 - -
Cma13g00215 583 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 14 558 - -
Cma13g00215 583 Gene3D MFS general substrate transporter like domains 337 543 IPR036259 -
Cma13g00215 583 SUPERFAMILY MFS general substrate transporter 232 541 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00211 Cma-Chr13:1666780 Cma13g00215 Cma-Chr13:1708400 0 dispersed
Cma13g00215 Cma-Chr13:1708400 Cma13g00225 Cma-Chr13:1763648 0 dispersed
Cma13g00217 Cma-Chr13:1718264 Cma13g00215 Cma-Chr13:1708400 7.11E-86 dispersed
Cma13g00218 Cma-Chr13:1722513 Cma13g00215 Cma-Chr13:1708400 0 dispersed
Cma13g00220 Cma-Chr13:1731564 Cma13g00215 Cma-Chr13:1708400 3.14E-107 dispersed
Cma13g00214 Cma-Chr13:1702706 Cma13g00215 Cma-Chr13:1708400 0 tandem
Cma13g00215 Cma-Chr13:1708400 Cma13g00216 Cma-Chr13:1712926 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00215 - - cmos:111464768 1030.01