Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00216 ATGGCCGACAACTCTTTACCAGAAAGCTGGCGTTTTATCAAACAAGTCGTAGAAGGACGATGGTTCGCGGTATTCGCCTCCTTTCTAATCATGATCGGTGCTGGTTCAACCTACATTTTTGGAACATACTCGAAAGCAATAAAGTCGCAATTCAATTACAATCAAACACAAATCAACACATTAGGATTTGCCAAAGATCTTGGCTCAAACTTTGGAGTTTTTGCGGGCCTTCTCGGCGAAGTTGCTCCACCATGGGTTCTATTCCTCGTCGGTTCAGCTCTCAACTTCTGGAGCTACTTCATGATTTGGCTCTCCATCACCGGCCGTATCGCCAAGCCCCCGTTTTGGGAAATGTTCCTTTTCATCTGCGTAGCTGCGAATTCACAAAATTTCGCCAACACCGCCATTTTGGTCACGAGCGTTCGAAACTTCCCGGACCGACGAGGCATCATTCTCGGGTTACTCAAGGGTTTCGTTGGGTTCGGAGGTGCTATTTTAACTCAATTCTATTTAGCTCTTTACGGCCATGATAACCCAACCAATTTGGTGCTTCTTCTCTCTTGGCTACCAACCGTTGTGTCTATGTTGTTTTTTCTCTCAATTCGACCAATCAAAGTCCGTAAACATCCAGATGAGCTTAGAGTTCTTTACCATTTGCTTTATGTGTCCATAATTTTGGCGCTGTTTCTCTTATTCTTAACCATAACCCAAAAACAAACAGTGTTTACTCAAGAAGCTTACATGAGCGGCGCCACCGTCATCATCGGCTTATTGCTTATCCCTCTTTTGATAGCCATTAGAGAAGAGTTCTTGCTCTTCAAACTCAACAAACAAACCCTAAATAACAATCCTACCGTCCCCATTTTAATGCCGGAGCACGAGCCTTCCCCCAAAGCCCCACCCACAATAGAGCAAATTCCCGAGGCTTCAACCTCGTGTTTCTCAATGGCATTCAAAAGGCCACAAAGAGGTGAAGATTTCACCATTTTACAAGCTTTATTCAGCAAAGACATGGCGCTTGTTTTCATAGCCACACTTAGTGCCTGTGGCGCATCAATTGCAGCCATTGATAACTTAGGTCAAGTTGGTGAATCACTTGGCTATCCATCTCAAACAATAAGCATATTCGTTTCGTGGGTTTCGATATTCAATTTCTTCGGTCGGGTTTTCTCTGGTTTCATCTCGGAAGCGCTTATGACCAAATACAAACTACCCCGTCCTCTCATGTTCGCTTTTTCTCATCTTCTAACTTGCATTGGCATTCTTTTTATTGCCTTCCCATATAAGGGTTCCGTTTACGCAGCGTCCTTGATCATTGGGTTCGGGTTTGGAGCGCAAGTTCCAATGGTGTTCGCCATAATCTCGGAACTCTTCGGCCTCAAATATTACTCGACAATCTTCAATTGTGGGCAATTGGCTGTCCCAATTGGATCTTACATACTGAACGTTGATGTAATTGGGAAGTTGTATGACATTGAAGCAGCAAAGCTTGGTGGAGTTAAGAATGGGAAGGGACTAACTTGCACGGGCACTCCTTGCTTTAGTGGGTCTTTCTTGATTTTGGCTGTGGTGGTATTGTTCGGAGCAGTGGTTTCGCTTGTGTTGGCTTATAGGACTCAAGACTTTTACAAAGGCGACGTTTATAACAGGTATAGAGAGGACATGTGGATTCCTCAATCGGATATGGAATTCTATTGTATAGATGACAGGAAGAAAGGTGGTAACAATTTACCACGGATGGATATGCCGCCCAAATATAATTTTCTCAAGCTTTAA 1776 43.81 MADNSLPESWRFIKQVVEGRWFAVFASFLIMIGAGSTYIFGTYSKAIKSQFNYNQTQINTLGFAKDLGSNFGVFAGLLGEVAPPWVLFLVGSALNFWSYFMIWLSITGRIAKPPFWEMFLFICVAANSQNFANTAILVTSVRNFPDRRGIILGLLKGFVGFGGAILTQFYLALYGHDNPTNLVLLLSWLPTVVSMLFFLSIRPIKVRKHPDELRVLYHLLYVSIILALFLLFLTITQKQTVFTQEAYMSGATVIIGLLLIPLLIAIREEFLLFKLNKQTLNNNPTVPILMPEHEPSPKAPPTIEQIPEASTSCFSMAFKRPQRGEDFTILQALFSKDMALVFIATLSACGASIAAIDNLGQVGESLGYPSQTISIFVSWVSIFNFFGRVFSGFISEALMTKYKLPRPLMFAFSHLLTCIGILFIAFPYKGSVYAASLIIGFGFGAQVPMVFAIISELFGLKYYSTIFNCGQLAVPIGSYILNVDVIGKLYDIEAAKLGGVKNGKGLTCTGTPCFSGSFLILAVVVLFGAVVSLVLAYRTQDFYKGDVYNRYREDMWIPQSDMEFYCIDDRKKGGNNLPRMDMPPKYNFLKL 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1712926 1714701 - CmaCh13G002160.1 Cma13g00216 306043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00216 591 Gene3D MFS general substrate transporter like domains 15 210 IPR036259 -
Cma13g00216 591 Gene3D MFS general substrate transporter like domains 337 543 IPR036259 -
Cma13g00216 591 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 7 554 - -
Cma13g00216 591 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 554 - -
Cma13g00216 591 CDD MFS_Mch1p_like 19 529 - -
Cma13g00216 591 Pfam Nodulin-like 20 266 IPR010658 -
Cma13g00216 591 SUPERFAMILY MFS general substrate transporter 20 541 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00216 Cma-Chr13:1712926 Cma13g00223 Cma-Chr13:1746359 0 dispersed
Cma18g00910 Cma-Chr18:7807517 Cma13g00216 Cma-Chr13:1712926 4.80E-173 dispersed
Cma13g00216 Cma-Chr13:1712926 Cma13g00218 Cma-Chr13:1722513 1.83E-132 proximal
Cma13g00215 Cma-Chr13:1708400 Cma13g00216 Cma-Chr13:1712926 0 tandem
Cma13g00216 Cma-Chr13:1712926 Cma13g00217 Cma-Chr13:1718264 2.41E-06 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00216 - - cmo:103502570 875.544