Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00219 ATGGGCAACAAGGGAGGATCAGAAGCTTGGGGTTTCATCAAACAAGTGGTAACAGGACGATGGTTTAGTGTATTCGCCGGACTGATAATGATGATCGGCAACGGCACCACTTACGTGTTTCCAACATATTCCAAAGTCATAAAAACCCAATTTGATTACAGCCAAACCCAAATTAACACATTGGGATTCGCCAAAGATCTCGGGTCGAACGTCGGAATTATCGCCGGGCTTCTGGCGGAGGTGACTCCGACGTGGGTTCTCTTCATAGTTGGGGCATTTCAAAACTTCACCGGCTTCTTCTTGATTTGGCTCTCCATAACTGCCCGGATCGCCAAGCCAAAATTCTGGCAAATGTTCATTCTGGTTTGCTTCGGTACTAATTCTTCAAATTGGGCCAACACTGCCATTATGGTGACGAGCGTGAGAAACTTCCCCGACCGACGAGGGATCATTTTGGGTCTTCTTAAAGGGTATGTGGGTATTGGAGGAGCCATCATGAGCCAACTTTATTTAGCCATTTACGGCCACAATGATCCATCCAATCTGGTTCTTCTTTTCGCATGGCTCCCCTCTCTCCTAATCCTCATCCTTTTCCCCTCAATTCGACCAATCCGTATCCGTAAGCATCCCAATGAACTCAAAGTGTTTTACCAGTTACTTTACGTCTCAATTCTTTTGGCCATTTTCATCTTGTTTTTAACCATTGCACAAAAGCAAGTGGTTTTCTCTCAAGCTGGGTACGTAGGTGGCGCATCCTTTGTGGTTTCCTTACTGTGCGTACCCATTTTAATCGCATGTAGAGAAGAGTTGTTGCTCTACAAACTCAACAAACAAACCGCTGGTCCTTCTGTCACAGTCTCCATGGTTCACCAAAACCCTCCCACCCTCTCCGCCTCTGCCGACTCGGAAATCCCCGAGATTTTGCCCTCGTGTTGCGAAAACATATGGAACAAGCCTGAAAGAGGGGAGGATTTCACCATCTTGCAAGCCGTGTTCAGCAAAGATATGGCTCTTATTTGCTTAGCTACATTTTCTGGATGTGGGTCATCTCTAGCCGCTATAGATAATCTAGGTCAAGTTGGGGAATCACTTGGCTACCCACAACGAGCCATAGGCATCCTTGTTTCATGGGTTTCCATATTCAATTTCTTCGGCCGAGTTTTCTCTGGCTTCATCTCAGAAACCTTGATGACCAAATACAAGTTACCTCGTCCTCTAACCTTCTCTTTTGCCTTTCTCATCACTTGCGTTGGCCAGCTTTTCATCGCCTACCCTTTCCCAGGCTCCGTCTACTTCGCTGCCATAATTATTGGGTTTGGATTTGGAGCTCAAAATCCAATGCTATTTGCCGTAATATCTGAGATGTTTGGTCTTAGACATTACTCGACGTTGTTCAATTGTGGGCAATTGACAGTCCCACTTGGGTCTTACATACTAAACGTGGATGTTGTCGGGAAGCTGTACGATATGGAAGCTTTGCATGAAGGTAAGCAGATTGCGGGAAAGGGCTTAACTTGCACGGGAGCTCATTGCTTTGGTGGGTCTTTCACAATATTGGCTGCAGCGACATTGTTTGGAGCTGTGGTTATGTTGGTGTTGGCTTACAGGACTCGAGAATTCTACAAAAGGGATGTGTATAAGAACTTTAACGAGGAGATATGGATTCCACAAACCCAAATGGAGTTCTATCGATTAGATAACAAGAAGAGCATTGAGGATTAA 1722 45.47 MGNKGGSEAWGFIKQVVTGRWFSVFAGLIMMIGNGTTYVFPTYSKVIKTQFDYSQTQINTLGFAKDLGSNVGIIAGLLAEVTPTWVLFIVGAFQNFTGFFLIWLSITARIAKPKFWQMFILVCFGTNSSNWANTAIMVTSVRNFPDRRGIILGLLKGYVGIGGAIMSQLYLAIYGHNDPSNLVLLFAWLPSLLILILFPSIRPIRIRKHPNELKVFYQLLYVSILLAIFILFLTIAQKQVVFSQAGYVGGASFVVSLLCVPILIACREELLLYKLNKQTAGPSVTVSMVHQNPPTLSASADSEIPEILPSCCENIWNKPERGEDFTILQAVFSKDMALICLATFSGCGSSLAAIDNLGQVGESLGYPQRAIGILVSWVSIFNFFGRVFSGFISETLMTKYKLPRPLTFSFAFLITCVGQLFIAYPFPGSVYFAAIIIGFGFGAQNPMLFAVISEMFGLRHYSTLFNCGQLTVPLGSYILNVDVVGKLYDMEALHEGKQIAGKGLTCTGAHCFGGSFTILAAATLFGAVVMLVLAYRTREFYKRDVYKNFNEEIWIPQTQMEFYRLDNKKSIED 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1727164 1728885 + CmaCh13G002190.1 Cma13g00219 306046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00219 573 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 4 552 - -
Cma13g00219 573 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 4 552 - -
Cma13g00219 573 Gene3D MFS general substrate transporter like domains 335 543 IPR036259 -
Cma13g00219 573 Gene3D MFS general substrate transporter like domains 18 210 IPR036259 -
Cma13g00219 573 Pfam Nodulin-like 20 265 IPR010658 -
Cma13g00219 573 SUPERFAMILY MFS general substrate transporter 22 539 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00213 Cma-Chr13:1691448 Cma13g00219 Cma-Chr13:1727164 0 dispersed
Cma13g00214 Cma-Chr13:1702706 Cma13g00219 Cma-Chr13:1727164 0 dispersed
Cma13g00219 Cma-Chr13:1727164 Cma13g00223 Cma-Chr13:1746359 0 dispersed
Cma13g00219 Cma-Chr13:1727164 Cma13g00221 Cma-Chr13:1738648 7.36E-07 proximal
Cma13g00219 Cma-Chr13:1727164 Cma13g00226 Cma-Chr13:1767532 0 proximal
Cma13g00219 Cma-Chr13:1727164 Cma13g00220 Cma-Chr13:1731564 1.59E-57 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00219 - - csv:101204150 868.226