Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00222 ATGATAATATCTTGGTTAACTCATTCTGTTGAAGCAGATGTCGCTAAAAGCATTATTCACGCCAAGACAGCTCATCAAGTGTGGGTTGATCTTCGCGATCAATTCTCACAAAAGAATGCTCCAGCAATTTTTCAAATACAAAACTCGATAGCAACGACGTCACAAGGAATCATGGCATTGTCAACATATTTCACCAAGCTCAAAGCACTCTGGGATGAACTGGAAGCGTACCGCACACCATTTACGTGTAATCAACGTCAAATACATATTGATCAACACGAAGAAGACAAGTTGATGCAATTGCTCATGGGGCTCAATGAGTCTTATAAAGCGGTGAGATCTAACATATTGATGATGTCTCCATTACCTAATGTGAGGCAAGCTTATTCATTACTTGTACAAGAAGAGATGCAGCGACAGGTAACTTCTAAACCTACTGAGAATTTCTCGATTGCATCAGTAGTGCAGAAGAAAACAACATATTCAAAATTCGCCAAGGACAAATTGTGTGAACACTGCAATAAAAGTGGTCATACAATCAATGAGTGTCGAATTCTTAAGTTTCATTGTAAGTTTTGTGATAGAAGGGGACATACAGAAAATCGGTGTCGACAGAAAAATAATTCTACAAGGACAAGACAAGTCAATCAACACAATCATCGTGGATACCGATCATCTGCAAATATGGCCGATGTTTCACAGTTGAATACAGAAGAACAGTCACCTAATTCCATTCCAAATTTTTCTTCTGAGCAATTACGACAGATAGCACAAGCCTTATCTGCAATCAATCAAAACTCTTCTGGTAATTCTGACAATCACATCAATGTTGCAGGACTTGGCTACGGGGAAGATGATTGGCTCGGCCGTGATGTTAAATTTTGTGAAGATGATTTTCCTTTTTCATCAGCTTCACAAACTTCGACATTAGCTCCTTCGACTCCTGTTGTTCCACTTCATGATCCATCCTACTTAAGCATCCATCCTCCACCTTCCATTCCTCCACTTACTACTTCGTCGTCTCCTCCACCTTCTCCAAATTTGCCCACTGATTCCAATCCTATCCCGCCTGATACATCAGCTCCACTGCGACGTTCTACTCGCACTAAACAGCCTCCAGCTTGGCATAAGGATTATGAGATGTCTTCTGGAGCCAATCATTTAACCTCTAGCTCAAGTCCCGGCACTGGCACCAGGCCTGACATAGCTTATTCAGTTCGTATGCTTAGAAGTAAACCACATTGGGAGGCAGCTCTTCGAGTTGTGAGGTACATCAAAGGCACTCCTGGTCAAGGACTCCTACTGCCATCTGAAAACAATTTAAGATTACAAGCATATTGCGATTCTGATTGGGGTGGTTGCCGAACTTCCAGACGGTCTATTTCTGGGTTCTGCATTTTCCTTGGAAATTCAATTATTTCTTGGAAGTCTAAAAAGCAGACTAATGTGTCCAGATCATCAACAGAAGCCGAGTATCGAGCTATGACAAATACTTGTTTAGAGTTAACTTGGTTAAGATACATTCTTCAAGACTTGAATGTTCCACTGTCCGAACCAGCATTATTATATTGTGATAATCAAGCAGCATTACATATAGCTGCTAATCCAGTTTTTCACGAACGTACGAAACACATTGAAATAGATTGTCATATAGTTCGAGAAAAGTTACAAGCTGGAATCATCAAACCGTGTTATATTTCGACCAAAATGCAATTGGCAGATGTTTTTACTAAAGCTCTGGGAAGACAGCAATTTGATCTTTTGAAGGACAAGTTGGGTGTGATCGACATACACTCTCCAACTTGA 1806 40.53 MIISWLTHSVEADVAKSIIHAKTAHQVWVDLRDQFSQKNAPAIFQIQNSIATTSQGIMALSTYFTKLKALWDELEAYRTPFTCNQRQIHIDQHEEDKLMQLLMGLNESYKAVRSNILMMSPLPNVRQAYSLLVQEEMQRQVTSKPTENFSIASVVQKKTTYSKFAKDKLCEHCNKSGHTINECRILKFHCKFCDRRGHTENRCRQKNNSTRTRQVNQHNHRGYRSSANMADVSQLNTEEQSPNSIPNFSSEQLRQIAQALSAINQNSSGNSDNHINVAGLGYGEDDWLGRDVKFCEDDFPFSSASQTSTLAPSTPVVPLHDPSYLSIHPPPSIPPLTTSSSPPPSPNLPTDSNPIPPDTSAPLRRSTRTKQPPAWHKDYEMSSGANHLTSSSSPGTGTRPDIAYSVRMLRSKPHWEAALRVVRYIKGTPGQGLLLPSENNLRLQAYCDSDWGGCRTSRRSISGFCIFLGNSIISWKSKKQTNVSRSSTEAEYRAMTNTCLELTWLRYILQDLNVPLSEPALLYCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQAGIIKPCYISTKMQLADVFTKALGRQQFDLLKDKLGVIDIHSPT 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1741666 1745672 + CmaCh13G002220.1 Cma13g00222 306049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00222 601 MobiDBLite consensus disorder prediction 204 227 - -
Cma13g00222 601 MobiDBLite consensus disorder prediction 208 227 - -
Cma13g00222 601 PANTHER - 12 217 - -
Cma13g00222 601 PANTHER - 12 217 - -
Cma13g00222 601 Pfam gag-polypeptide of LTR copia-type 4 140 - -
Cma13g00222 601 SUPERFAMILY Retrovirus zinc finger-like domains 164 207 IPR036875 GO:0003676|GO:0008270
Cma13g00222 601 SUPERFAMILY DNA/RNA polymerases 406 550 IPR043502 -
Cma13g00222 601 MobiDBLite consensus disorder prediction 383 399 - -
Cma13g00222 601 MobiDBLite consensus disorder prediction 321 399 - -
Cma13g00222 601 MobiDBLite consensus disorder prediction 324 356 - -
Cma13g00222 601 CDD RNase_HI_RT_Ty1 444 583 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00222 Cma-Chr13:1741666 Cma20g01017 Cma-Chr20:7069490 1.87E-46 dispersed
Cma13g00222 Cma-Chr13:1741666 Cma11g01376 Cma-Chr11:9086795 1.79E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00222 - - cpep:111776274 546.199