Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00223 ATGGCCGACAACTCTTTACCAGAAAGCTGGCGTTTTATCAAACAAGTCGTAGAAGGACGATGGTTCGCAGTATTCGCCTCCTTTCTAATCATGATCGGTGCTGGTTCAACCTACATTTTTGGAACATACTCGAAAGCAATAAAGTCGCAATTCGATTACAATCAAACACAAATCAACACATTAGGATTTGCTAAAGATCTTGGCTCAAACTTCGGAGTTTTTGCGGGCCTTCTCGGCGAAGTTGCTCCACCATGGGTTCTATTCCTCGTCGGTTCAGCTCTCAACTTCTGGAGCTACTTCATGATTTGGCTCTCCATCACCGGCCGTATCGTCAAGCCCCCGTTTTGGGAAATGTTCGTTTTCATTTGCGTAGCTGCGAATTCACAAAATTTCGCCAACACCGCCATTTTGGTCACAAGCGTTCGAAACTTCCCGGACCGACGAGGCATCATTCTCGGGTTACTCAAGGGTTTCGTTGGGTTCGGAGGTGCTATTTTAACTCAATTCTATTTAGCTCTTTACGGCCATGATAACCCAACCAATTTGGTGCTTCTTCTCTCTTGGCTACCAACCGTTGTGTCTATGTTGTTTTTTCTCTCAATTCGACCAATCAAAGTCCGTAAACATCCAGATGAGCTTAGAGTTCTTTACCATTTGCTTTATGTGTCCATAATTTTGGCGCTGTTTCTCTTATTCTTAACCATAACCCAAAAACAAACAGTGTTTACTCAAGAAGCTTACATGAGCGGCGCCACCGTCATCATCGGCTTATTGCTTATCCCTCTTTTGATAGCCATTAGAGAAGAGTTCTTGCTCTTCAAACTCAACAAACAAACCCTAAATAACAATCCTACCGTCCCCATTTTAATGCCGGAGCACGAGCCTTCCCCCAAAGCCCCACCCACAATAGAGCAAATTCCCGAGGCTTCAACCTCGTGTTTCTCAATGGCATTCAAAAGGCCACAAAGAGGTGAAGATTTCACCATTTTACAAGCTTTATTCAGCAAAGACATGGCGCTTGTTTTCATAGCCACACTTAGTGCCTGTGGCGCATCAATTGCAGCCATTGATAACTTAGGTCAAGTTGGTGAATCACTTGGCTATCCATCTCAAACAATAAGCATATTCGTTTCGTGGGTTTCGATATTCAATTTCTTCGGTCGGGTCTTCTCCGGTTTCATCTCGGATGCGCTTATGACCAAATACAAATTACCCCGTCCTCTCATGTTCGCTTTTTCCCATATTTTAACATGCGTTGGCATTCTCTTTATTGCCTTCCCATATAAGGGCTCCGTATACGCAGCGTCCTTGATCATTGGGTTCGGGTTCGGAGCACAAGTTCCAATGTTGTTTGCAATAATCTCGGAACTCTTCGGTCTCAAATATTACTCAACAATCTTCAATTGTGGGCAATTGGCTGTCCCAATTGGATCTTACATACTGAACGTTGATGTAATTGGGAGGTTGTATGACATTGAAGCAGCAAAGCTTGGTGGAGTTAAGAATGGGAAGGGGCTAACATGCACGGGCACTCCTTGCTTTAGTGGGTCTTTCTTGATTTTGGCTGTGGTGGTATTGTTCGGGGCAGTGGCTTCGCTTGTGTTGGCTTATAGGACTCGAGACTTTTACAAAGGCGACGTTTATAACAGGTATAGAGAGGACATGTGGATTCCTCAATCGGATATGGAATTCTATTGTATAGATGACAGGAAGAAAGGTGATGACAATTTAGCACGGATGGATATGCCACCCAAGTATAATTTTCTCAAGTCTTAA 1776 43.81 MADNSLPESWRFIKQVVEGRWFAVFASFLIMIGAGSTYIFGTYSKAIKSQFDYNQTQINTLGFAKDLGSNFGVFAGLLGEVAPPWVLFLVGSALNFWSYFMIWLSITGRIVKPPFWEMFVFICVAANSQNFANTAILVTSVRNFPDRRGIILGLLKGFVGFGGAILTQFYLALYGHDNPTNLVLLLSWLPTVVSMLFFLSIRPIKVRKHPDELRVLYHLLYVSIILALFLLFLTITQKQTVFTQEAYMSGATVIIGLLLIPLLIAIREEFLLFKLNKQTLNNNPTVPILMPEHEPSPKAPPTIEQIPEASTSCFSMAFKRPQRGEDFTILQALFSKDMALVFIATLSACGASIAAIDNLGQVGESLGYPSQTISIFVSWVSIFNFFGRVFSGFISDALMTKYKLPRPLMFAFSHILTCVGILFIAFPYKGSVYAASLIIGFGFGAQVPMLFAIISELFGLKYYSTIFNCGQLAVPIGSYILNVDVIGRLYDIEAAKLGGVKNGKGLTCTGTPCFSGSFLILAVVVLFGAVASLVLAYRTRDFYKGDVYNRYREDMWIPQSDMEFYCIDDRKKGDDNLARMDMPPKYNFLKS 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1746359 1748134 + CmaCh13G002230.1 Cma13g00223 306050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00223 591 SUPERFAMILY MFS general substrate transporter 20 541 IPR036259 -
Cma13g00223 591 Gene3D MFS general substrate transporter like domains 337 543 IPR036259 -
Cma13g00223 591 Gene3D MFS general substrate transporter like domains 15 210 IPR036259 -
Cma13g00223 591 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 7 554 - -
Cma13g00223 591 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 7 554 - -
Cma13g00223 591 Pfam Nodulin-like 20 266 IPR010658 -
Cma13g00223 591 CDD MFS_Mch1p_like 19 529 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00216 Cma-Chr13:1712926 Cma13g00223 Cma-Chr13:1746359 0 dispersed
Cma13g00219 Cma-Chr13:1727164 Cma13g00223 Cma-Chr13:1746359 0 dispersed
Cma13g00223 Cma-Chr13:1746359 Cma13g00225 Cma-Chr13:1763648 0 dispersed
Cma13g00223 Cma-Chr13:1746359 Cma13g00224 Cma-Chr13:1755172 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00223 - - csv:101204389 876.7