Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00226 ATGGGTGCAGAAACTCCCACAAACAGGGGAGCCGACGCCGGCCGGGGCGGCGGATTGCTCCAATTTGCGCTGCACGTGTTAAAAGGCCGGTGGTTCACTGTCTTCGCCACATTTCTGATCATGGCCGGCGCCGGCGCCACTTATCTCTTCGGCGTCTACTCGAAACAGATCAAATCCACGCTCGGATACGACCAGACGACACTAAATCTGATGGGTTTTTTCAAGGATCTCGGAGCCAATGTCGGTGTACTCTCCGGCTTAGTGGCGGAGGTGACACCGACATGGTTCGTCCTCCTCCTCGGCTCCGTCTTGAACTTCACCGGCTACTTCATGATCTGGCTCGCCGTTACTGGCCGGATCGCAAAACCCAAAGTCTGGCAAATGTGTCTTTACATCTGCGTTGGCGCAAATTCTCAAAACTTCGCCAATACCGGCGCGTTGGTCACTTGCATCCAGAATTTCCCCGAGAGCCGTGGCGCTATGATGGGCCTTTTAAAGGGCTTCACAGGGCTGAGCGGCGCTATTCTTACACAGATTTATTTAGCCGTTTACGGCGAGGACGCCACTGCGTTGATCCTTCTAATTGCGTGGCTTCCGGCGGCTCTCTCCGTCGTGTTCATTTTCAATATCCGAAAGCTCAAGGCGGAGAGACGGCCAAACGAGACAAGGGTTTTTTACCATTTCCTTTATGTCTCAATTGGGTTGGCGATTTTCATTATGCTTATGAATATTATTCAGAAGGAAGTGGAATTCAATCATACGGCTTATGCGTTAAGCGCCACCGTAATTTGTGCTCTGCTTTTCCTTCCTCTGTTCATCGTGATTAGAGAAGAGCTTCAGATTTGGAATTCTAAGATCAACCCACCAATTCCAATCGAAAACCCAACAGAACCCAAAATTTCCACAGATGAATCAAAGGAAATCAAGAACAATCCAGACCCAAAACCATACCCACCGCCGCCGTCCTGTTTCTCCAGCATCTGCGACAAACCAGCAAGAGGCGACGACTACACAATCCTCCAAGCCCTTCTCAGCATCGACATGATGGTGCTTTTCATCGCAACATTCTGCGGCCTCGGCACAAGCTTAACCGCCGTCGACAATTTGGGGCAGATCGGAGAATCCCTCGGCTACCCATTAAAAACAGTAAAATCCTTCGTTTCATTAGTAAGCATATGGAATTACTTCGGAAGAGTATTCTCCGGCTTCGTCTCCGAAACCCTTCTCGCAAAATTCAAATTCCCAAGACCTTTAATGATGACATTGGTTCTTCTTCTATCTTGCATCGGCCAACTCCTAATCGCCTTCCCAATTCCCGGCTCCGTCTACATTGCATCGGTCATCATCGGATTCTCCTTCGGCGCGCAGCTTCCGTTACTTTTCGCCATAATTTCCGAGCTCTTCGGCCTTAAATATTTCTCCACTCTGTTCAATTGCGGCCAAATCGCAAGCCCGTTGGGGTCGTACATTCTGAACGTGAAGGTCGCCGGAATGATGTACGATGCGGAGGCGTTGAAGCAGCTGAAGGAGATGGGGATAGACAGGGCGGCGGTGAAGGAATTGACCTGCATTGGAAAGCGGTGTTACAGGAAATCGTTTACGTTAATGGCGATTGTGACGTTTGTTGGGGCTCTGGTTTCGCTGGTTTTGGTGATGAGGACGAGGGAGTTTTACAGAGGAGACATTTACAAGAGGTTCAGAGAGGAAGTGAAGGAGGAGACAAGTCGGGGAGAGGCTGCCGCTGTGGAATCCAAGTGA 1758 50.17 MGAETPTNRGADAGRGGGLLQFALHVLKGRWFTVFATFLIMAGAGATYLFGVYSKQIKSTLGYDQTTLNLMGFFKDLGANVGVLSGLVAEVTPTWFVLLLGSVLNFTGYFMIWLAVTGRIAKPKVWQMCLYICVGANSQNFANTGALVTCIQNFPESRGAMMGLLKGFTGLSGAILTQIYLAVYGEDATALILLIAWLPAALSVVFIFNIRKLKAERRPNETRVFYHFLYVSIGLAIFIMLMNIIQKEVEFNHTAYALSATVICALLFLPLFIVIREELQIWNSKINPPIPIENPTEPKISTDESKEIKNNPDPKPYPPPPSCFSSICDKPARGDDYTILQALLSIDMMVLFIATFCGLGTSLTAVDNLGQIGESLGYPLKTVKSFVSLVSIWNYFGRVFSGFVSETLLAKFKFPRPLMMTLVLLLSCIGQLLIAFPIPGSVYIASVIIGFSFGAQLPLLFAIISELFGLKYFSTLFNCGQIASPLGSYILNVKVAGMMYDAEALKQLKEMGIDRAAVKELTCIGKRCYRKSFTLMAIVTFVGALVSLVLVMRTREFYRGDIYKRFREEVKEETSRGEAAAVESK 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1767532 1769289 - CmaCh13G002260.1 Cma13g00226 306053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00226 585 MobiDBLite consensus disorder prediction 293 321 - -
Cma13g00226 585 Pfam Nodulin-like 30 275 IPR010658 -
Cma13g00226 585 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 16 573 - -
Cma13g00226 585 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 16 573 - -
Cma13g00226 585 SUPERFAMILY MFS general substrate transporter 31 559 IPR036259 -
Cma13g00226 585 CDD MFS_Mch1p_like 29 544 - -
Cma13g00226 585 Gene3D MFS general substrate transporter like domains 343 558 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01389 Cma-Chr4:7099324 Cma13g00226 Cma-Chr13:1767532 0 dispersed
Cma11g00169 Cma-Chr11:882867 Cma13g00226 Cma-Chr13:1767532 1.12E-26 dispersed
Cma13g00206 Cma-Chr13:1630082 Cma13g00226 Cma-Chr13:1767532 0 dispersed
Cma13g00226 Cma-Chr13:1767532 Cma15g00501 Cma-Chr15:2251275 0 dispersed
Cma20g00761 Cma-Chr20:3590690 Cma13g00226 Cma-Chr13:1767532 1.14E-96 dispersed
Cma13g00219 Cma-Chr13:1727164 Cma13g00226 Cma-Chr13:1767532 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00226 - - csv:101217765 949.503