Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00229 ATGAGCGGCGTTGAGGGGTCTCCAGGGAGCTCCATGCATGGGGTGACAGGGAGAGAGCAAACCTTTGCGTTCTCCGTGGCATCCCCAATTGTCCCAACCGACACAACAGCTAAATTTGCATTACCAGTGGACTCCGAGCACAAGGCCAAGGTGTTCAAGCTCTTCTCCTTCGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTCACTTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTTGTCCCCATCATCCGTGATAACCTCAACCTCACCAAAGTCGACATTGGCAACGCCGGCGTCACCTCCGTCTCCGGCAGCATCTTCTCTCGTCTTGTCATGGGCGCCGTCTGCGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCCCCCACCGTCTTCTGCATGTCCTTCGTCTCCGATGCCGCCGGCTACATCGCCGTCCGCTTCATGATCGGCTTCTCCCTCGCCACCTTCGTCTCCTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGCCTCGTCAATGGCACCGCCGCCGGGTGGGGCAACATGGGCGGAGGAGCCACCCAGCTCATCATGCCCTTGCTCTACGATATCATCAAGAGAGCCGGCGCTACTCCCTTCACTGCCTGGCGGATTGCCTTCTTCATCCCTGGCTGGCTTCATGTCATCATGGGCATCTTGGTTCTCACTCTCGGCCAGGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGCGACGTTACCAAAGATAAGTTCTCCAAGGTCCTATGGTATGCCATCACCAACTATCGAACTTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGCGTCGAGCTCTCCACCGACAACGTCATTGCCGAGTATTTCTACGACAGGTTTGATCTAAAGCTGCAGACGGCCGGGATCATCGCAGCGACGTTCGGAATGGCGAATCTAGTGGCTCGGCCGTTCGGAGGGTATGCGTCGGACTTTGCGGCGCGATACTTCGGGATGAGGGGAAGGCTGTGGACTCTATGGATCCTGCAGACATTCGGGGGAGTGTTCTGCATGTGGCTTGGGAAGGCGGACAAGCTCCCAACAGCCATAGCGGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCGTGTGGAGCCACATTTGGGGTCATTCCCTTCATTTCTAGGCGGTCTCTAGGGATCATATCAGGGCTGACTGGAGCAGGAGGGAACTTCGGGTCTGGTTTGACTCAGTTAGTGTTCTTCTCAACCACCAAATACTCCACAGATAAAGGGCTGTTCTTGATGGGGATAATGATTGTGTGTTGCACTCTTCCAGTCACTTTGGTTCACTTCCCTCAATGGGGAAGCATGTTCTTACCCCCAACCAAACACCTTGAAAAATCCACTGAGGAATTCTATTACGGCGCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTCGCTGAGAACAGCCGCTCCGAACGTGGAAGGCGCGTTGGCTCAGCCCCAACCCCACCAAACACCACTCCTTCCCATGTTTGA 1593 55.24 MSGVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSSLQKKGDVTKDKFSKVLWYAITNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLQTAGIIAATFGMANLVARPFGGYASDFAARYFGMRGRLWTLWILQTFGGVFCMWLGKADKLPTAIAAMILFSIGAQAACGATFGVIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDKGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHLEKSTEEFYYGAEWTEDEKKKGLHQQSIKFAENSRSERGRRVGSAPTPPNTTPSHV 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1810006 1812446 + CmaCh13G002290.1 Cma13g00229 306056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00229 530 MobiDBLite consensus disorder prediction 492 530 - -
Cma13g00229 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 527 IPR044772 GO:0015112
Cma13g00229 530 SUPERFAMILY MFS general substrate transporter 59 460 IPR036259 -
Cma13g00229 530 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Cma13g00229 530 MobiDBLite consensus disorder prediction 492 513 - -
Cma13g00229 530 Gene3D MFS general substrate transporter like domains 264 466 IPR036259 -
Cma13g00229 530 Gene3D MFS general substrate transporter like domains 57 254 IPR036259 -
Cma13g00229 530 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Cma13g00229 530 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 1 527 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01748 Cma-Chr4:8787116 Cma13g00229 Cma-Chr13:1810006 0 dispersed
Cma13g00229 Cma-Chr13:1810006 Cma13g00232 Cma-Chr13:1847082 0 dispersed
Cma13g00229 Cma-Chr13:1810006 Cma13g00230 Cma-Chr13:1819971 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00229 K02575 - csv:101218244 1031.55