Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00231 ATGCTCGCCAAATTTGGTGTCAATTGGACATCGGATGGACGCTCCACGGCACCATATGACCGCTCGCCAAAATCAAGNAGCGGCGTTGAGGGGTCTCCAGGGAGCTCCATGCATGGGGTGACAGGGAGAGAGCAAACCTTTGCGTTCTCCGTGGCATCCCCAATTGTCCCAACCGACACAACAGCTAAATTTGCATTACCAGTGGACTCCGAGCACAAGGCCAAGGTGTTCAAGCTCTTCTCCTTCGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTCACTTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTTGTCCCCATCATCCGTGATAACCTCAACCTCACCAAAGTCGACATTGGCAACGCCGGCGTCACCTCCGTCTCCGGCAGCATCTTCTCTCGTCTTGTCATGGGCGCCGTCTGCGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCCCCCACCGTCTTCTGCATGTCCTTCGTCTCCGATGCCGCCGGCTACATCGCCGTCCGCTTCATGATCGGCTTCTCCCTCGCCACCTTCGTCTCCTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGCCTCGTCAATGGCACCGCCGCCGGGTGGGGCAACATGGGCGGAGGAGCCACCCAGCTCATCATGCCCTTGCTCTACGATATCATCAAGAGAGCCGGCGCTACTCCCTTCACTGCCTGGCGGATTGCCTTCTTCATCCCTGGCTGGCTTCATGTCATCATGGGCATCTTGGTTCTCACTCTCGGCCAGGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGCGACGTTACCAAAGATAAGTTCTCCAAGGTCCTATGGTATGCCATCACCAACTATCGAACTTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGCGTCGAGCTCTCCACCGACAACGTCATTGCCGAGTATTTCTACGACAGGTTTGATCTAAAGCTGCAGACGGCCGGGATCATCGCAGCGACGTTCGGAATGGCGAATCTAGTGGCTCGGCCGTTCGGAGGGTATGCGTCGGACTTTGCGGCGCGATACTTCGGGATGAGGGGAAGGCTGTGGACTCTATGGATCCTGCAGACATTCGGGGGAGTGTTCTGCATGTGGCTTGGGAAGGCGGACAAGCTCCCAACAGCCATAGCGGCAATGATATTGTTCTCAATAGGAGCACAGGCTGCGTGTGGAGCCACATTTGGGGTCATTCCCTTCATTTCTAGGCGGTCTCTAGGGATCATATCAGGGCTGACTGGAGCAGGAGGGAACTTCGGGTCTGGTTTGACTCAGTTAGTGTTCTTCTCAACCACCAAATACTCCACAGACAAAGGGCTGTTCTTGATGGGGATAATGATTGTGTGTTGCACTCTTCCAGTCACTTTGGTTCACTTCCCTCAATGGGGAAGCATGTTCTTACCCCCAACCAAACACCTTGAAAAATCCACTGAGGAATTCTATTACGGCGCTGAATGGACTGAGGATGAAAAGAAGAAGGGTTTGCACCAACAAAGCATCAAGTTCGCTGAGAACAGCCGCTCCGAACGTGGAAGGCGCGTTGGCTCAGCCCCAACCCCACCAAACACCACTCCTTCCCATGTTTGA 1668 55.16 MLAKFGVNWTSDGRSTAPYDRSPKSXSGVEGSPGSSMHGVTGREQTFAFSVASPIVPTDTTAKFALPVDSEHKAKVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSSLQKKGDVTKDKFSKVLWYAITNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLQTAGIIAATFGMANLVARPFGGYASDFAARYFGMRGRLWTLWILQTFGGVFCMWLGKADKLPTAIAAMILFSIGAQAACGATFGVIPFISRRSLGIISGLTGAGGNFGSGLTQLVFFSTTKYSTDKGLFLMGIMIVCCTLPVTLVHFPQWGSMFLPPTKHLEKSTEEFYYGAEWTEDEKKKGLHQQSIKFAENSRSERGRRVGSAPTPPNTTPSHV 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1844170 1845945 - CmaCh13G002310.1 Cma13g00231 306058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00231 555 CDD MFS_NRT2_like 90 483 IPR044772 GO:0015112
Cma13g00231 555 MobiDBLite consensus disorder prediction 520 555 - -
Cma13g00231 555 Pfam Major Facilitator Superfamily 94 450 IPR011701 GO:0022857|GO:0055085
Cma13g00231 555 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 29 552 - -
Cma13g00231 555 MobiDBLite consensus disorder prediction 16 40 - -
Cma13g00231 555 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 29 552 IPR044772 GO:0015112
Cma13g00231 555 Gene3D MFS general substrate transporter like domains 82 279 IPR036259 -
Cma13g00231 555 Gene3D MFS general substrate transporter like domains 289 491 IPR036259 -
Cma13g00231 555 MobiDBLite consensus disorder prediction 520 538 - -
Cma13g00231 555 SUPERFAMILY MFS general substrate transporter 84 485 IPR036259 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00521 Cma13g00231 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00231 Cma-Chr13:1844170 Cma13g00233 Cma-Chr13:1848875 0 dispersed
Cma13g00230 Cma-Chr13:1819971 Cma13g00231 Cma-Chr13:1844170 0 tandem
Cma13g00231 Cma-Chr13:1844170 Cma13g00232 Cma-Chr13:1847082 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00231 K02575 - csv:101218244 1030.01