Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00233 ATGTCACAAGTCCAAATTTTAGCAAAAATCTGGGAGCAAATTAATTTCTACTCGGTTGACCTTTATTTNGTGGCATCCCCAATTGTCCCAACCGACACAACAGCTAAATTTGCATTACCAGTGGACTCCGAGCACAAGGCCAAGGTGTTCAAGCTCTTCTCCTTCGCCAACCCCCACATGAGAACCTTCCACCTTTCTTGGATTTCCTTCTTCACTTGCTTCGTCTCCACCTTCGCCGCCGCCCCTCTTGTCCCCATCATCCGTGATAACCTCAACCTCACCAAAGTCGACATTGGCAACGCCGGCGTCACCTCCGTCTCCGGCAGCATCTTCTCTCGTCTTGTCATGGGCGCCGTCTGCGACCTTCTCGGCCCTCGCTACGGCTGCGCCTTTCTCATCATGCTCTCCGCCCCCACCGTCTTCTGCATGTCCTTCGTCTCCGATGCCGCCGGCTACATCGCCGTCCGCTTCATGATCGGCTTCTCCCTCGCCACCTTCGTCTCCTGCCAGTACTGGATGAGCACCATGTTCAACAGCCAGATCATCGGCCTCGTCAATGGCACCGCCGCCGGGTGGGGCAACATGGGCGGAGGAGCCACCCAGCTCATCATGCCCTTGCTCTACGATATCATCAAGAGAGCCGGCGCTACTCCCTTCACTGCCTGGCGGATTGCCTTCTTCATCCCTGGCTGGCTTCATGTCATCATGGGCATCTTGGTTCTCACTCTCGGCCAGGACTTGCCCGATGGCAACCTTAGCAGCCTTCAGAAGAAGGGCGACGTTACCAAAGATAAGTTCTCCAAGGTCCTATGGTATGCCATCACCAACTATCGAACTTGGATCTTCGTCCTCCTCTACGGCTACTCCATGGGCGTCGAGCTCTCCACCGACAACGTCATTGCCGAGTATTTCTACGACAGGTTTGATCTAAAGCTGCAGACGGCCGGGATCATCGCAGCGACGTTCGGAATGGCGAATCTAGTGGCTCGGCCGTTCGGAGGGTATGCGTCGGACTTTGCGGCGCGATACTTCGGGATGAGGGGAAGGCTGTGGACTCTATGGATCCTGCAGACATTCGGGGGAGTGTTCTGNAAAAAAATCTTTACTCGGAATTTAAAAAGGGTTGCAAATTATTTAATGACCCAAAAGCATAATTTACGGTTGTGTAATACACGACGGGACTTTTCACGGTTCAAACCACAAGGTGCGGCGAAACTTGATTCTCCATATCTAACTTTTGTTCTAACTTCAATCTCTCCTTATAATGTCAACGCACACTCCATTATAAATAGGTGA 1296 52.47 MSQVQILAKIWEQINFYSVDLYXVASPIVPTDTTAKFALPVDSEHKAKVFKLFSFANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKVDIGNAGVTSVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFCMSFVSDAAGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLIMPLLYDIIKRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLSSLQKKGDVTKDKFSKVLWYAITNYRTWIFVLLYGYSMGVELSTDNVIAEYFYDRFDLKLQTAGIIAATFGMANLVARPFGGYASDFAARYFGMRGRLWTLWILQTFGGVFXKKIFTRNLKRVANYLMTQKHNLRLCNTRRDFSRFKPQGAAKLDSPYLTFVLTSISPYNVNAHSIINR 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1848875 1852205 - CmaCh13G002330.1 Cma13g00233 306060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00233 431 Gene3D MFS general substrate transporter like domains 55 252 IPR036259 -
Cma13g00233 431 CDD MFS_NRT2_like 63 363 IPR044772 GO:0015112
Cma13g00233 431 Gene3D MFS general substrate transporter like domains 262 374 IPR036259 -
Cma13g00233 431 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.1-LIKE 22 365 - -
Cma13g00233 431 SUPERFAMILY MFS general substrate transporter 57 363 IPR036259 -
Cma13g00233 431 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 22 365 IPR044772 GO:0015112
Cma13g00233 431 Pfam Major Facilitator Superfamily 67 358 IPR011701 GO:0022857|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00231 Cma-Chr13:1844170 Cma13g00233 Cma-Chr13:1848875 0 dispersed
Cma13g00232 Cma-Chr13:1847082 Cma13g00233 Cma-Chr13:1848875 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00233 K02575 - jre:108985433 665.225