Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00244 ATGGAACATAGCTATGGATTTGAACATGTCGCTCAACAAAGCCGGCGTGATAAGCTAAGAGTATCAAGAAACTCTGATGAACAATTGAGTTTTCAAAACTCAGGCCATTCTGGTTTGGATCTAGATCTTGTTAGAATTCAAAATTTTAACAAGAATTCGATTTTGCCTTCAGTTATGATCAATTTCTCGAGAGATTCGGACATAATGTTGAGCCAAGAACTTGTGGGAGATGCTTCGTTGGGTTCTGTTTCCAATTATTGGAAAAGTTCTGATTGGGAGATGAACTGTGGAAATAATTGTTTGGGAGGTGAAATGTTGAATGATTCCACAGTTTATACACTTCAAGATGTTGTTAACCAAACTGCTGCTTGTGAAGGCCGTGGAAATGAGTCAAACGTGTTGCCTTATGACACTACTGGTTTTGTGAGTGATTCCAATCCACAACGTCTAGCGCTGTCTCTGTCTTCTAATACACAGTTTCAAGAATCAGAGGAATCCAAAACAGTCAAATCTGAAACTATTGGTAACAAAAATTATGGGAAATCTCTTCAAAATATGATGGGAGTTTCTGTGAATCCATATAGAAACACTGGCCCTCTTGGTCCCTTTATTGGGTATGCCACCATTTTAAAGAGTTCCAAATTCTTAAAGCCTGCTCAACTTTTGTTAGACGAATTTTGTAGCTCAAATGCTCATAAATTTGTCCAACCATGTGAGTCCTCACCTGCCCTTAATGCAGATGATGAAACAAATATTAGTGGAGTTGGGAGCATTTCCTCTGAATCTCATCAACCTGAGTATCAGAAAAAGAAGGCAAAACTTCTATATATGCTCGACGAGCAAATGCAAATGGTAGTGTCATCGTTTGAATCAGTGGCTGGGCTTAGTTCTGCGACGCCTTACATTTCTCTGGCGCTTAAGACAGTGTCAAGACACTTCCAGTCTCTAAAGAATGCCATCTCCGAACAATTGAAGTATCTGAGGAAGGTAGTTGGTGAGGATTCGTCGTCCATCTCTGCTGGGACAAGCGGCAGGAAATACATGGAACAGAGCTTCCAAAAGCAAAAAACCGGCATTGTTAATATCGGATTCCTCGAATCCCAAAATGTTTGGAGGCCGCATAGAGGCTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCGTACCCCACGGACACAGATAAACACATGTTGGCCACTCAAACAGGCTTATCTCGAAACCAGGTCTCGAATTGGTTCATAAATGCACGAGTGCGGGTGTGGAAGCCAATGGTAGAAGAGATACACATGCTAGAAACCAATGGCATGGCAGAAATGAACAACAAAGGCCATGTTACAATAGAAAACACAGCCGGTTGGACCAGTAGTGAACAACAGCCTCTAAAAAGCCATGGTGATGTGAATGAAATTATTACTAGTCAGTGGGATCAAGGCAAACCATCCAGATTGGACAATGGGGTTCAGTCCAACACGGAAGGAGAATTGATGGGGTTCGTGCCATATAGAGCCAGCGCGGTCGACGTCGGAGGAGTCGGAACTGTGTCTCTAACATTAGGCCTTCGCCACCGAGTCGAGAGCGCTCACCATCAACAGCAGCAACAAGATGAGCAACTACTACGCCATTATGGAAGTGAAATGATCCATGATTTTGTGGGGGTTTGGTAA 1689 42.92 MEHSYGFEHVAQQSRRDKLRVSRNSDEQLSFQNSGHSGLDLDLVRIQNFNKNSILPSVMINFSRDSDIMLSQELVGDASLGSVSNYWKSSDWEMNCGNNCLGGEMLNDSTVYTLQDVVNQTAACEGRGNESNVLPYDTTGFVSDSNPQRLALSLSSNTQFQESEESKTVKSETIGNKNYGKSLQNMMGVSVNPYRNTGPLGPFIGYATILKSSKFLKPAQLLLDEFCSSNAHKFVQPCESSPALNADDETNISGVGSISSESHQPEYQKKKAKLLYMLDEQMQMVVSSFESVAGLSSATPYISLALKTVSRHFQSLKNAISEQLKYLRKVVGEDSSSISAGTSGRKYMEQSFQKQKTGIVNIGFLESQNVWRPHRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETNGMAEMNNKGHVTIENTAGWTSSEQQPLKSHGDVNEIITSQWDQGKPSRLDNGVQSNTEGELMGFVPYRASAVDVGGVGTVSLTLGLRHRVESAHHQQQQQDEQLLRHYGSEMIHDFVGVW 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 1997873 2002065 + CmaCh13G002440.1 Cma13g00244 306071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00244 562 SMART prehox3 204 322 IPR006563 -
Cma13g00244 562 Pfam Homeobox KN domain 388 427 IPR008422 GO:0003677|GO:0006355
Cma13g00244 562 SUPERFAMILY Homeodomain-like 373 438 IPR009057 -
Cma13g00244 562 CDD homeodomain 371 432 IPR001356 GO:0003677
Cma13g00244 562 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 109 532 - -
Cma13g00244 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 109 532 - -
Cma13g00244 562 ProSiteProfiles 'Homeobox' domain profile. 368 431 IPR001356 GO:0003677
Cma13g00244 562 SMART HOX_1 371 435 IPR001356 GO:0003677
Cma13g00244 562 Gene3D - 374 436 - -
Cma13g00244 562 Pfam Associated with HOX 209 321 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma01g00505 Cma13g00244 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00271 Cma-Chr6:1331793 Cma13g00244 Cma-Chr13:1997873 5.01E-71 dispersed
Cma13g00244 Cma-Chr13:1997873 Cma20g01145 Cma-Chr20:9080279 6.81E-68 dispersed
Cma01g00505 Cma-Chr1:2580105 Cma13g00244 Cma-Chr13:1997873 9.94E-34 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36074 PF07526 POX 3.30E-28 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00244 - - cmax:111469309 1087.4