Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00250 TCCGTTCACAGATTTCTCAGGTGGAAGATAGTTTTTGTCCAGAATTCGACATATCAATATTTGGGAGTTTTAAGTTGCGTTGAGAAGAAGATGGGTATCTTTCGGAATCCTGCAACACAAAACGGGGATTATTTAGAAGGGATGATCAATGATTATGTTGGAGGAAAAGGAAAGTTAAGACCTCAAAGAAATTCTTCAACAAAGCTTGTTGCTGGTCTTACATGTCTCCAGTTTGCCTTCGCATTATATGCAACATTTCTACTGTATTATGTCAGCCCTGCAATAGACTTGAGAACCAAACCAGACTTCTCTTGGGCTACAAGAATCGCTCAACAATGGAGACAGTTCGTAATACCGCCCCACGTAGTGGGTCGAATCGAAGAACCAACTTCTCTAATGATGCAAGCGGAATTCAGACCGATTACTCCGGAGGAAGCTTGTGAGAATGAGAAGATTGATTTTGAGCAAAAGAAGTCCACTGATGGGCAGATGATAAAGTTGAAAACAGAGCTTTACAATGAGATTCTAGATTTTCAAAGCAAAAGCTTTGGAACTGAGACTCTTTCTCAGCTAATGGCAATGAAGTCCAAGTGGGATTTGAGAGGACCAAACAAGCCAAAAGTTACAGTGATCTTGAACCATTTTAAGAGGAAAACTCTGTGTGCACAACTTAACTCTTTGCTTCAGCAAACCCTTCCCTTCCACCATATTTGGGTGCTTGCCTTCGGGAGCCCAAATGAGCTCTCTTTGAAAAGAATTGTAGATAGCTATAACAACTCCAGAATTAGCTTTATTAGCTCAAGCTATGACTTCAAGTACTATGGACGGTTCCAAATGGCCTTACAAACCGAAGCTGATTTAGTATATATTCTTGATGATGACATGATTCCAGGCCGTAAAATGCTACAGATTTTGTCTCATGTAGCAGGGACCGACAAATACAAGAATGCAGTTTTGGGCAGCATAGGTAGGATTTTGCCCTTTCGACAGAAGGATTTCACATTCCCGAGTTATCGGAAGTTTCGATCCAAGGAAGCAGGGCTTTACTTGCCTGATCCTGCTTATGACATCACCGTCAATAAAATTGTGCAGGTCGACTTTCTCTCGAGCTCTTGGTTCTTATCCGCTGAGCTTGTCAAGACACTTTTCATTGAAACCCCCTTCACCTTTGCAACTGGAGAAGATCTCCATCTAAGCTATCAGCTTCAAAAGTATAGAAATGCTGCCTCATTTGTTCTTCCTGTAGACCCAAAAGACAAGGAAACTTGGGGTGACAGTGAACACAGGCTGGCTTACGTTTCCGAGACCACTGTCATATTTAAGGACATTGTTCAAGTTCGGGATGATCAATGGTGGAAGGCGATGTCTACTGGTTATATCACACAATGGGCAGCTATGTATCCTCAAAAGATAGATGCTCTATTTTATGCTCATTCTGTTGATGAAGCTAAAGCACTAGCACCACTTCTAGAAAAGTTCAGATCCACTGTTGGAAAGAAGGCTTATATTGCAGTGTCTGGCGGTAACTTTTGCCCGTGTGAAGATGCTGCAGCTGCTCTTAAATGGCCGAAGTCGGTCTGTAAAGAACGGAGGTTCAAGATATTCGACTTGGCCATTGGGGCTCTCTCTGGAATATCAAATTCTGAGGTCCCTGTGGTGCAGGCAGTGTATGCCAGTATGAAGGGATTAATCAAAATACACAATCCCAGCGTCGTCATCACTGTGGCCGACGTTGATCCTAATGTGAAGAAGGCTTTGAAAATGGCATCAGAGGCTAACTTGAATGGTAGTACAACAGTGATTCTTTTACCAAGGCCTTCGATTTCTAAAGTTCTTTGGATGGCCGATCTTCGATCAACAGCACTTCCAAATTGGAACAAGATGCGGATTTCAATCAACATTATCACACAAAACCGTGCGGGCTCATTAACAAGGCTTCTCAAGTCGCTAAAAGATGCATATTACCTAGGGGATGAGATACCTATCAGCTTCAACATGGACAGTAAAGTCGACGAGAAAACTATAAAATTAGTAAGCTCCTTTGAGTGGCCTCATGGCCCCAAAAGCCTCAGAAGAAGAATCATCCAAGGAGGGCTGATACGAGCTGTAAGCGAGAGTTGGTATCCTGCTTCGGACGACGATTATGGACTCCTACTCGAAGACGATATTGAAGTCTCTCCATACTACTACCTTTGGATCAAATACGCCCTCCTAGCATACCACTACGATCCACAAATATCTCTACCCGAGCTATCATCGATCTCCCTCTACACGCCTCGGCTAGTCGAAGTGGTTAAAGAAAGACCTAAATGGAATGCAACAGAGTTCTTCAAGCGGATTCATCCAAACACACCTTACCTCCACCAGCTCCCCTGCAGTTGGGGAGCAGTTTTCTTCCCCAAACATTGGAGGGAGTTTTATGTTTACATGAACACAAGATACACGGAAAATGCAAAAGAGAATCCAGTTCAGATCCCTAAATCTAGAACAAACGGTTGGCAAGCATCATGGAAGAAGTTCCTAATCGACATGATGTACTTAAGAGGCTACGTAAGTCTATACCCTAACTTCCCAAATCAAGCCAGTTTTTCAACGAACCACATGGAACCAGGAGCTCACATAAGTGCAAAGGACAATATCGTGAAGCACAAGAAGGAAGATTTCGAGGTTCCATTATTGAAAGAAAACTTCGGGAACTTCTTACCGAATGGGAAATTACCGGCGGCTTCGAGACTTCCATCGCTGAACCTCTTCAATCAACCGGTGTCGTTGAAGGGACTCAAGTCCGCCGGAGCCAAGCTAGGGCAAGATGTGCTGAAATGTGAAGTTTCTGAGATTGTAGCGGTGAACCATGAGACTGGTCTGCCTTCGCACTGTGCAAAATTCTGA 2889 43.44 SVHRFLRWKIVFVQNSTYQYLGVLSCVEKKMGIFRNPATQNGDYLEGMINDYVGGKGKLRPQRNSSTKLVAGLTCLQFAFALYATFLLYYVSPAIDLRTKPDFSWATRIAQQWRQFVIPPHVVGRIEEPTSLMMQAEFRPITPEEACENEKIDFEQKKSTDGQMIKLKTELYNEILDFQSKSFGTETLSQLMAMKSKWDLRGPNKPKVTVILNHFKRKTLCAQLNSLLQQTLPFHHIWVLAFGSPNELSLKRIVDSYNNSRISFISSSYDFKYYGRFQMALQTEADLVYILDDDMIPGRKMLQILSHVAGTDKYKNAVLGSIGRILPFRQKDFTFPSYRKFRSKEAGLYLPDPAYDITVNKIVQVDFLSSSWFLSAELVKTLFIETPFTFATGEDLHLSYQLQKYRNAASFVLPVDPKDKETWGDSEHRLAYVSETTVIFKDIVQVRDDQWWKAMSTGYITQWAAMYPQKIDALFYAHSVDEAKALAPLLEKFRSTVGKKAYIAVSGGNFCPCEDAAAALKWPKSVCKERRFKIFDLAIGALSGISNSEVPVVQAVYASMKGLIKIHNPSVVITVADVDPNVKKALKMASEANLNGSTTVILLPRPSISKVLWMADLRSTALPNWNKMRISINIITQNRAGSLTRLLKSLKDAYYLGDEIPISFNMDSKVDEKTIKLVSSFEWPHGPKSLRRRIIQGGLIRAVSESWYPASDDDYGLLLEDDIEVSPYYYLWIKYALLAYHYDPQISLPELSSISLYTPRLVEVVKERPKWNATEFFKRIHPNTPYLHQLPCSWGAVFFPKHWREFYVYMNTRYTENAKENPVQIPKSRTNGWQASWKKFLIDMMYLRGYVSLYPNFPNQASFSTNHMEPGAHISAKDNIVKHKKEDFEVPLLKENFGNFLPNGKLPAASRLPSLNLFNQPVSLKGLKSAGAKLGQDVLKCEVSEIVAVNHETGLPSHCAKF 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2067977 2071322 + CmaCh13G002500.1 Cma13g00250 306077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00250 962 PANTHER OSJNBA0004B13.7 PROTEIN 56 962 - -
Cma13g00250 962 SUPERFAMILY Nucleotide-diphospho-sugar transferases 202 405 IPR029044 -
Cma13g00250 962 CDD Glyco_tranf_GTA_type 210 320 - -
Cma13g00250 962 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 629 878 IPR029044 -
Cma13g00250 962 PANTHER - 56 962 - -
Cma13g00250 962 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 193 415 IPR029044 -
Cma13g00250 962 SUPERFAMILY Nucleotide-diphospho-sugar transferases 627 816 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01290 Cma13g00250 CCT
Cma01g00494 Cma13g00250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01290 Cma-Chr2:7568444 Cma13g00250 Cma-Chr13:2067977 2.24E-27 transposed
Cma01g00494 Cma-Chr1:2518773 Cma13g00250 Cma-Chr13:2067977 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00250 - - cpep:111783035 1868.59