Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00258 | ATGAATTCAAATTCCCATATGCCTTTCTCTTCTGATTTCCATTCAAGCTCCCTACTTTACAACCTATCAATTTTGAAGGATAAACTCCACCAAATCCAATCGGTTGTCTCCGTCGTCGTCTACGACTTCCAAAACTCGACCGAGTCCCACCCACGAGACTTGTCGCAGTTACCGACGGTCAACTCTATGATCCAGGAACTTATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTGTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTTCAAGGTCTCGTTGACAACGACAATCAACCTTCCATCGCCCTTCTCGACGTGGCCAACGATCATCGCCATCATCAGAACTGGTACAACATGACATCTACTACTAATAACGACGACAACGACAACAATAGCAATAGAGTAACGACAACGGAAACAACACAAGATTATCGAACTTCGATCAATATTGTTGAGCTAGACGCGACGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGCGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCCGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACTAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCATTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGCGGCAAGAAATTTTCAGTTCTATCAGATTTGAGGACTCATGAGAAACATTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTTGCTCTGTTCGTCGGGCATGCCCCGGCAATCAGTTCGTCGGTAAGAGCGTAG | 984 | 44.72 | MNSNSHMPFSSDFHSSSLLYNLSILKDKLHQIQSVVSVVVYDFQNSTESHPRDLSQLPTVNSMIQELIMAASSMLFTCQEMNNFAVNSSLHNDVVDNNLQGLVDNDNQPSIALLDVANDHRHHQNWYNMTSTTNNDDNDNNSNRVTTTETTQDYRTSINIVELDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPAISSSVRA | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 2152325 | 2153620 | + | CmaCh13G002580.1 | Cma13g00258 | 306085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00258 | 327 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 176 | 196 | IPR013087 | - | |
Cma13g00258 | 327 | Gene3D | Classic Zinc Finger | 147 | 232 | - | - | |
Cma13g00258 | 327 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 10 | 324 | IPR044300 | GO:0010044|GO:0010447 | |
Cma13g00258 | 327 | PANTHER | OS08G0562300 PROTEIN | 10 | 324 | - | - | |
Cma13g00258 | 327 | MobiDBLite | consensus disorder prediction | 128 | 149 | - | - | |
Cma13g00258 | 327 | Pfam | Zinc finger, C2H2 type | 174 | 196 | IPR013087 | - | |
Cma13g00258 | 327 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 174 | 201 | IPR013087 | - | |
Cma13g00258 | 327 | SUPERFAMILY | beta-beta-alpha zinc fingers | 172 | 199 | IPR036236 | - | |
Cma13g00258 | 327 | Gene3D | Classic Zinc Finger | 263 | 313 | - | - | |
Cma13g00258 | 327 | SMART | c2h2final6 | 174 | 196 | IPR013087 | - | |
Cma13g00258 | 327 | SMART | c2h2final6 | 265 | 287 | IPR013087 | - | |
Cma13g00258 | 327 | SMART | c2h2final6 | 227 | 260 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00547 | Cma-Chr7:2360128 | Cma13g00258 | Cma-Chr13:2152325 | 4.99E-72 | dispersed | |
Cma09g01147 | Cma-Chr9:6561937 | Cma13g00258 | Cma-Chr13:2152325 | 4.90E-72 | dispersed | |
Cma13g00258 | Cma-Chr13:2152325 | Cma04g02013 | Cma-Chr4:12697785 | 4.85E-26 | dispersed | |
Cma13g00258 | Cma-Chr13:2152325 | Cma01g00917 | Cma-Chr1:5565297 | 1.08E-78 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36075 | PF00096 | zf-C2H2 | 8.10E-05 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00258 | - | - | cmos:111464900 | 644.039 |