Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00258 ATGAATTCAAATTCCCATATGCCTTTCTCTTCTGATTTCCATTCAAGCTCCCTACTTTACAACCTATCAATTTTGAAGGATAAACTCCACCAAATCCAATCGGTTGTCTCCGTCGTCGTCTACGACTTCCAAAACTCGACCGAGTCCCACCCACGAGACTTGTCGCAGTTACCGACGGTCAACTCTATGATCCAGGAACTTATCATGGCTGCTTCTTCCATGTTGTTCACATGTCAAGAGATGAATAACTTCGCTGTGAACTCGTCGTTACATAACGATGTTGTCGATAATAATCTTCAAGGTCTCGTTGACAACGACAATCAACCTTCCATCGCCCTTCTCGACGTGGCCAACGATCATCGCCATCATCAGAACTGGTACAACATGACATCTACTACTAATAACGACGACAACGACAACAATAGCAATAGAGTAACGACAACGGAAACAACACAAGATTATCGAACTTCGATCAATATTGTTGAGCTAGACGCGACGGATCTTCTTGCAAAATACACCCATTACTGCCAAATTTGCGGGAAAGGGTTCAAGCGGGACGCGAACCTACGAATGCACATGCGAGCACACGGCGACGAGTACAAAGCGAGCGGGGCGTTGAGTAACCCGGAGAAGAGTCATAGAAGGGATATGAACATAAACAAGAAATTAGGGACTAAATACTCATGTCCACAAGAGGGCTGCAGATGGAACCAAAAACATGCCAAGTTTCAGCCATTGAAATCACTGATTTGTGTGAAAAATCATTACAAGAGAACCCATTGCCCCAAAATGTATGTCTGCAAGCTCTGCAGCGGCAAGAAATTTTCAGTTCTATCAGATTTGAGGACTCATGAGAAACATTGTGGAGACATGAAATGGGTTTGTTCTTGTGGCACCACATTTTACAGGAAAGATAAGCTCATGGGTCATGTTGCTCTGTTCGTCGGGCATGCCCCGGCAATCAGTTCGTCGGTAAGAGCGTAG 984 44.72 MNSNSHMPFSSDFHSSSLLYNLSILKDKLHQIQSVVSVVVYDFQNSTESHPRDLSQLPTVNSMIQELIMAASSMLFTCQEMNNFAVNSSLHNDVVDNNLQGLVDNDNQPSIALLDVANDHRHHQNWYNMTSTTNNDDNDNNSNRVTTTETTQDYRTSINIVELDATDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRRDMNINKKLGTKYSCPQEGCRWNQKHAKFQPLKSLICVKNHYKRTHCPKMYVCKLCSGKKFSVLSDLRTHEKHCGDMKWVCSCGTTFYRKDKLMGHVALFVGHAPAISSSVRA 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2152325 2153620 + CmaCh13G002580.1 Cma13g00258 306085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00258 327 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Cma13g00258 327 Gene3D Classic Zinc Finger 147 232 - -
Cma13g00258 327 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 324 IPR044300 GO:0010044|GO:0010447
Cma13g00258 327 PANTHER OS08G0562300 PROTEIN 10 324 - -
Cma13g00258 327 MobiDBLite consensus disorder prediction 128 149 - -
Cma13g00258 327 Pfam Zinc finger, C2H2 type 174 196 IPR013087 -
Cma13g00258 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Cma13g00258 327 SUPERFAMILY beta-beta-alpha zinc fingers 172 199 IPR036236 -
Cma13g00258 327 Gene3D Classic Zinc Finger 263 313 - -
Cma13g00258 327 SMART c2h2final6 174 196 IPR013087 -
Cma13g00258 327 SMART c2h2final6 265 287 IPR013087 -
Cma13g00258 327 SMART c2h2final6 227 260 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00547 Cma-Chr7:2360128 Cma13g00258 Cma-Chr13:2152325 4.99E-72 dispersed
Cma09g01147 Cma-Chr9:6561937 Cma13g00258 Cma-Chr13:2152325 4.90E-72 dispersed
Cma13g00258 Cma-Chr13:2152325 Cma04g02013 Cma-Chr4:12697785 4.85E-26 dispersed
Cma13g00258 Cma-Chr13:2152325 Cma01g00917 Cma-Chr1:5565297 1.08E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36075 PF00096 zf-C2H2 8.10E-05 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00258 - - cmos:111464900 644.039