Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00263 ATGGGTCAGATCCAGTACTCTGAGAAATACTTTGATGATATCTATGAGTATAGGCATGTCGTGCTTACTCCTGATGTGGCCAAACTTCTGCCCAAGAATCGCCTTCTCTCTGAAAATGAATGGCGAGCGATTGGGGTTCAGCAGAGCCGTGGATGGGTGCATTATGCAATTCACCGCCCAGAGCCGCACATAATGCTGTTCAGGAGGCCACTCAACTATCAACAGCAGCAAGAGAATCAAGCTCAGCAGCAGATTCTAGCCAAAACTCTAATGGAATCTCTCCCTACAAATCAAAAGAAGAAGAAAAAAATCAGGAAGCTCTGTGGCCCAGTGAGATCTCTGTCATAG 348 46.26 MGQIQYSEKYFDDIYEYRHVVLTPDVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQQILAKTLMESLPTNQKKKKKIRKLCGPVRSLS 115
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2168852 2169752 - CmaCh13G002630.1 Cma13g00263 306090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00263 115 ProSitePatterns Cyclin-dependent kinases regulatory subunits signature 1. 6 24 IPR000789 GO:0016538
Cma13g00263 115 MobiDBLite consensus disorder prediction 96 115 - -
Cma13g00263 115 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Cma13g00263 115 Gene3D - 1 85 IPR036858 GO:0016538
Cma13g00263 115 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Cma13g00263 115 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Cma13g00263 115 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Cma13g00263 115 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Cma13g00263 115 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 1 99 - -
Cma13g00263 115 SMART CKS_2 3 72 IPR000789 GO:0016538
Cma13g00263 115 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT 1 99 - -
Cma13g00263 115 SUPERFAMILY Cell cycle regulatory proteins 1 83 IPR036858 GO:0016538
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01373 Cma13g00263 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00263 Cma-Chr13:2168852 Cma20g00533 Cma-Chr20:2550542 5.68E-45 dispersed
Cma13g00263 Cma-Chr13:2168852 Cma02g01373 Cma-Chr2:8007504 3.37E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00263 K02219 - csv:101204120 175.252