Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00269 ATGTCTAGTGGGCGCGGTGGTCGTGGTCGTGGTGCTGGAGGTCGTGGAGGGCAGTCGTCTCCGGCAATTTCTCGCGGTGGTGGTGGTAGAAGTGGCGGAGGGAGAGGTGGTCAAGGCGGTGGTGGAAGAGGTGGTCAAGGCGGTGGGGGAAGAGGGGGTCGAGGCGGCGGTGGGAGAGATGGAGGTCGGGTGGATCATCCGGCTACACAGCAGTTTCCTTCTCCGACTCCTCAGCCTACTCCGGTTGCTTCCCGTCCTCCACTCGAGACTTCTGCGGGAGCATCTTCTTCATCTTCTACAACTGCTGCTCTTTCACAGCCGGAGGCTTCTTCTTCGAGGATCGAGGCACAGTTGGAGAAGACATTGGTACTGCAGAATGTTCCGCCGTCTTCATCTAAGGCTATGACTGTGGCTAAGAGACCGGGATATGGAACCATTGGGCGCAAAGTTGTTGTTCGGGCTAATCATTTTCTGGTACAAGTTGAAGATAAAGATCTCTACCATTACGATGTTTCTATCTCACCTGAGGTTACATCCAAAAAGGTCTGCCGAGACATAATACACCAGCTTGCAAATATGTACAAAGAATCTCATTTAGGTGGAAGATTTCTAGCATATGATGGTGGGAAAAGTGTTTACGTTGCTGGTGAACTTCCATTTTCGTCCAAAGAGTTTATTATTAATTTAGTCCGTAATGATGATACCGGGTCTTCTCAACCAAGAAGGAAAGAACGTGAATTCAAAGTAACTATCAAATTTGCTTCCAAGCCAGACCTCAATCATCTACAACAGTTTTTACATGGACGGCAGCGAGATGCTCCTCAAGAAACCATCCAAGTTCTTGATGTAGTTCTGAGAACCACACCATCTATCCATTGCACAGTTGTTGGAAGGTCATTTTTCTCAACCGAGTTCGGAAAACCAGGTGAACTTGGTAATGGTGTTGAGTATTGGAGAGGATATTATCAAAGTCTGCGACCTGTACAAATGGGTCTATCTTTAAATATAGATGTGTCAGCCAGATCATTTTATGAACCGATATATGTGACAGATTATATTGCTAAACATTTCAATTTGAGGAATTTGCGAACAGCAACTGATCAGGATTTCCGGAAGATAAAAAAAGTACTTAGGGGTGTGAAGGTGGCATTAATGTGTGGGGAGCATGCCAGGACGTACAAAATTACTGGGATATCATCAGAGCCTCCTCATTCCTCTTATATAACTTTTGCATTCCATGCTTTTGTATTTGGAACAATCCGGTTTACTCTTGATAATCAGAGTACCCGAACAATCTCTGTTAGTCAATACTTTCATGAAAAATATGGTGTTCAGCTCAGGTCATCATTTCTACCTGCTATTCAAGCTGGTAATGATGCGAAGCCCATCTATTTGCCTATGGAGCTTTGTAGAATTGTTAACGGGCAGAGATATACCAAAAAGTTGAATGAACGGCAAGTAACTGAACTGTTAAGAGCGACTTGTCAGAGACCTGAGAATAGGGAATGGAGTATAAAGACGATGGTTGAAGGGAATAGGTATAATACTGATGACATTGTTAAGGATTTTGGCATTGAAGTTAGAGCAGAGTTATGTGATGTTGATGCTCGTGTTTTGCCATCCCCATCGCTCAGTTATCATGAAACAGGTGGAGAATCAAGGGTTGATCCAAGGATGGGTCAGTGGAATATGATTAATAAGAAAATGATCAATGGTGGTACAGTAGAACATTGGGCATGTGTGACTTTCTCCTCACGGTTGGATAAAGATTTGCCATCTGAATTTTGCAAGCAGTTGGTTAACATGTGCAGAAGCAAAGGAATTGCTTTTGCCCCTGCTCCGTTGTTTCCCATACGTGCTGCACATCCAAATCAAATTGATACTACGCTTAGAGATATTCATAAGGACTCTGTAAACATTTTGGGACCCAAGGGCAAATCTCTTCAGCTACTCATAATTATTTTACCTGATGTTACTGGATCGTATGGGAAGATTAAAAGGATTTGCGAGACAGAACTCGGAATTGTTTCACAATGTTGCCAGCCTAGGCAGGCACAGAAGCTAAACAAGCAATATTTTGAAAATGTGGCCCTTAAAATCAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAACTGATGCTATTCTTCGGAAAATTCCTATTGTCTCGGAGAAGCCTACAATAATCTTTGGAGCAGATGTCACGCACCCGCAACCAGGAGAGGACTCTAGTCCTTCAATAGCAGCTGTTGTCGCCTCCATGGACTGGCCCGAGGTAACGAAGTATAGGGGTATTGTTTCAGCCCAAGCTCATCGTGAAGAAATTATACAAGATTTGTACAAACAATTTGAAGATCCTCAAAGAGGGTTGGTGCATGCAGGGATGATTAGGGAGCTTTTTATTGCATTTAGAAGGTCAACGAATTTGAAACCGCACCGAATAATATTCTACAGAGATGGTGTAAGTGAAGGACAATTCTCTCAAGTTCTACTTTATGAGATGGATGCAATCAGGAAGGCATGTGCCTCCCTTGAAGCGGATTACCAACCTCCGGTTACCTTTATAGTTGTGCAAAAGAGGCATCATACTCGTCTTTTCCCCACCAGTCGCGATACTGATCGGAGTGGAAACATCCTTCCGGGTACTGTTGTTGATACCAAAATTTGTCATCCAACTGAGTTTGATTTCTATTTAAACAGCCATGCTGGCATACAGGGAACGAGTAGACCGACACATTATCACGTTCTATTCGACGAAAACAATTTCAGTGCAGATGAGATGCAAAAGCTTACCAATAATCTATGCTACACGTATGCAAGGTGCACGCGGTCTGTTTCCATTGTTCCCCCAGCATACTATGCCCATCTAGCAGCTTTTCGAGCTCGTCACTACATGGAGGTTGATGCATCCGATAGCGGTTCCACGGGTTTGGGTGGTGGGATTGTTCAGGTTCAGCGGTTGCCGACCGTAAGGGAGAATGTGAAGGATGAAAACCATGCCCTTCCCTAA 3009 44.2 MSSGRGGRGRGAGGRGGQSSPAISRGGGGRSGGGRGGQGGGGRGGQGGGGRGGRGGGGRDGGRVDHPATQQFPSPTPQPTPVASRPPLETSAGASSSSSTTAALSQPEASSSRIEAQLEKTLVLQNVPPSSSKAMTVAKRPGYGTIGRKVVVRANHFLVQVEDKDLYHYDVSISPEVTSKKVCRDIIHQLANMYKESHLGGRFLAYDGGKSVYVAGELPFSSKEFIINLVRNDDTGSSQPRRKEREFKVTIKFASKPDLNHLQQFLHGRQRDAPQETIQVLDVVLRTTPSIHCTVVGRSFFSTEFGKPGELGNGVEYWRGYYQSLRPVQMGLSLNIDVSARSFYEPIYVTDYIAKHFNLRNLRTATDQDFRKIKKVLRGVKVALMCGEHARTYKITGISSEPPHSSYITFAFHAFVFGTIRFTLDNQSTRTISVSQYFHEKYGVQLRSSFLPAIQAGNDAKPIYLPMELCRIVNGQRYTKKLNERQVTELLRATCQRPENREWSIKTMVEGNRYNTDDIVKDFGIEVRAELCDVDARVLPSPSLSYHETGGESRVDPRMGQWNMINKKMINGGTVEHWACVTFSSRLDKDLPSEFCKQLVNMCRSKGIAFAPAPLFPIRAAHPNQIDTTLRDIHKDSVNILGPKGKSLQLLIIILPDVTGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLTDAILRKIPIVSEKPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQAHREEIIQDLYKQFEDPQRGLVHAGMIRELFIAFRRSTNLKPHRIIFYRDGVSEGQFSQVLLYEMDAIRKACASLEADYQPPVTFIVVQKRHHTRLFPTSRDTDRSGNILPGTVVDTKICHPTEFDFYLNSHAGIQGTSRPTHYHVLFDENNFSADEMQKLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARHYMEVDASDSGSTGLGGGIVQVQRLPTVRENVKDENHALP 1002
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2215423 2222567 - CmaCh13G002690.1 Cma13g00269 306096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00269 1002 Pfam Piwi domain 652 965 IPR003165 GO:0003676
Cma13g00269 1002 CDD Piwi_ago-like 519 965 IPR045246 -
Cma13g00269 1002 MobiDBLite consensus disorder prediction 1 112 - -
Cma13g00269 1002 ProSiteProfiles Piwi domain profile. 650 966 IPR003165 GO:0003676
Cma13g00269 1002 SMART PAZ_2_a_3 349 496 IPR003100 GO:0005515
Cma13g00269 1002 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 983 - -
Cma13g00269 1002 Pfam PAZ domain 362 490 IPR003100 GO:0005515
Cma13g00269 1002 ProSiteProfiles PAZ domain profile. 422 474 IPR003100 GO:0005515
Cma13g00269 1002 SMART Piwi_a_2 650 966 IPR003165 GO:0003676
Cma13g00269 1002 Pfam N-terminal domain of argonaute 148 285 IPR032474 -
Cma13g00269 1002 PANTHER ARGONAUTE1 40 983 - -
Cma13g00269 1002 Gene3D - 538 712 - -
Cma13g00269 1002 Gene3D paz domain 341 478 - -
Cma13g00269 1002 SUPERFAMILY Ribonuclease H-like 645 966 IPR012337 -
Cma13g00269 1002 MobiDBLite consensus disorder prediction 89 112 - -
Cma13g00269 1002 Pfam Argonaute linker 2 domain 501 546 IPR032472 -
Cma13g00269 1002 SUPERFAMILY PAZ domain 150 515 IPR036085 GO:0005515
Cma13g00269 1002 Pfam Argonaute linker 1 domain 296 345 IPR014811 -
Cma13g00269 1002 SMART DUF1785_2 294 346 IPR014811 -
Cma13g00269 1002 Pfam Mid domain of argonaute 557 635 IPR032473 -
Cma13g00269 1002 CDD PAZ_argonaute_like 349 473 - -
Cma13g00269 1002 Gene3D - 719 999 IPR036397 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00269 Cma-Chr13:2215423 Cma14g01755 Cma-Chr14:12799089 0 dispersed
Cma13g00269 Cma-Chr13:2215423 Cma13g01111 Cma-Chr13:8310637 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00269 K11593 - csv:116403995 1485.7