Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00289 ATGGATTCAACCATCATCTTCTTATTCCCCGGTGCCTCCGACCACCTACTCCACTCTCTCCCCACCCTAGTCTCCATCTTGTTCTTCTCCTTCACGGCGGCCTTCACGGTGTTCTCCTTCTCCTTGTTCATTCTCCGACTTCGACCCTGCTGCAACTGCCCCATCTGCCACTCCTACCTCTCCTCCACATGGCTCGCCTCCTTCCCCAACTTATCCGATTGGTACGCCCACCTCCTCTCCCACTCCCCCACCGCCACCATCACCATCCACGTCCTCTCCAACATCCTCACCGCCAACCCCGACAACGTCCACCACATCCTCAAAACCAACTTCCACAACTACCCAAAAGGCAAACCCTTCTCCTCCATCCTCGGCGACCTCCTCGGCCACGGCATCTTCAACGTTGACGGCCACTCCTGGACCTTCCAACGCAAAATGGCTAGCTTAGAGCTCGGTAGCCTCTCCGTCCGCTCCCACGCCTTCCACATCCTAACCTCCCAGATTCAGACAAGGCTGCTTCCGATCCTGTGTTCGAATCACGGCATGCTGGATTTACAGGATATTTTTAAACGATTTTCTTTTGATAATATTTGTCGATTCTCCTTTGGGTTGGACCCTGGCTGTTTGAGCTTGTCTTTGCCTATTTCGGAGTTTGCTGTTGCCTTTGACTTGGCGTCTAGATTGTCGGCGGAGAGGGCTATTACGCCTTACCCTGTTATGTGGAGGATTAAGCGGCTGTTTGGATTGGGGTCGGAGAGGAAGCTTAGTGATGCTATTAAAATGGTGGATGATCTTGCCATGGAAGTCATACGCCATCGCCGGGAGATTGGATTCTCTCATCGGAATGATCTTCTCTCTAGATTCATGGCTTCCATTGATGACGACAGATATCTTAGAGACATTGTTGTCAGCTTCCTCCTCGCCGGCCGGGACACGGTGGCGTCGGCTTTGACTAGCTTCTTCTGGCTACTATCTCAAAACCCAGAAGTGGAGGACGAGATTCTCGCCGAGTCGGATCGGGTCATGGGACCCGACCCGGACGCGTTACCCAGTTTCGACAACCTTAAAGACATGCAATATCTTCACGCAGCGGTCTACGAGAATCTGCGCCTCTTTCCACCGGTTCAGTTCGACTCCAAGTTCGCCGAGGAAGACGATATCTTGCCGGACGGCACGTTTGTTCAGAAGGGTACAAGGGTAACTTACCACCCCTACGCCATGGGTCGGATGGACCGGATTTGGGGATCCGATTGTCTCCAGTTTAAACCGGAGAGGTGGCTCAAGAATGGAAGCTTTGCACCTGTAAACCCGTTTAAATTCCCTGTTTTTCAGGCCGGTTTACGGGTTTGTTTGGGGAAGGAGTTAGCGGTGATGGACGTGAAATGTACGGCGGTGGTTTTGATTCGGAAGTTTAAGATCCGGTTGGTTGGAACTGACCGGGTTGCCCGGTTTGCTCCCGGTCTGACGGCTAGCTGGAGAGGTGGGTTGCCGGTTCGAATTGAACAAAGAACCACCAGTTGA 1521 52.86 MDSTIIFLFPGASDHLLHSLPTLVSILFFSFTAAFTVFSFSLFILRLRPCCNCPICHSYLSSTWLASFPNLSDWYAHLLSHSPTATITIHVLSNILTANPDNVHHILKTNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWTFQRKMASLELGSLSVRSHAFHILTSQIQTRLLPILCSNHGMLDLQDIFKRFSFDNICRFSFGLDPGCLSLSLPISEFAVAFDLASRLSAERAITPYPVMWRIKRLFGLGSERKLSDAIKMVDDLAMEVIRHRREIGFSHRNDLLSRFMASIDDDRYLRDIVVSFLLAGRDTVASALTSFFWLLSQNPEVEDEILAESDRVMGPDPDALPSFDNLKDMQYLHAAVYENLRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGSDCLQFKPERWLKNGSFAPVNPFKFPVFQAGLRVCLGKELAVMDVKCTAVVLIRKFKIRLVGTDRVARFAPGLTASWRGGLPVRIEQRTTS 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2580900 2583259 - CmaCh13G002890.1 Cma13g00289 306116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00289 506 SUPERFAMILY Cytochrome P450 59 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PANTHER CYTOCHROME P450 26 501 - -
Cma13g00289 506 Gene3D Cytochrome P450 61 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS E-class P450 group I signature 440 450 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS E-class P450 group I signature 450 473 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PANTHER CYTOCHROME P450 94C1 26 501 - -
Cma13g00289 506 Pfam Cytochrome P450 94 477 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS P450 superfamily signature 363 374 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS P450 superfamily signature 450 461 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma13g00289 506 PRINTS P450 superfamily signature 441 450 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00463 Cma-Chr6:2183374 Cma13g00289 Cma-Chr13:2580900 0 dispersed
Cma10g00068 Cma-Chr10:262587 Cma13g00289 Cma-Chr13:2580900 3.68E-141 dispersed
Cma13g00289 Cma-Chr13:2580900 Cma14g00499 Cma-Chr14:2440225 9.85E-123 dispersed
Cma13g00289 Cma-Chr13:2580900 Cma11g00038 Cma-Chr11:173319 4.08E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00289 K20624 - csv:101207724 827.009