Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00292 ATGGGTTTGAGGAATCACATGGCACAAGAAAACCACATAACTTTCATAGAATGGCTTAAACCCTCCATTTCTCTCTCTTCTTCCCTTTCTTCGTCCTCTTCCTCGTCCTCTGATCGAGATTTGATATCTCCGACGACCGCCCAAAGGTGCCTGCCTTTGTTCACGGAGAAAGATGAAGAACGGGGTCGAATTCGAGATCGGGAAAGAAAAAGCTTGGGAATTAAAGAGGAAGATGAAGATTTGGTGAAAGTAGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCCCTAATTTCGGTGATGGGAATATGAATGGTTTTGTAAAGAAAGAAGAAATGCAGAAAAGCTTCTCTAATTTTAGTACTCAAGGAAGGTTTTGGATACCAACGCCGGCTCAGATCCTTGTCGGTCCGATGCAATTTGCTTGCTCCATCTGCCACAAATCTTTTAATAGATACAATAACATGCAGATGCACATGTGGGGACATGGCTCGGAGTACAGAAAAGGCCCAGAATCTCTTAGAGGATCACAGCCAGCAGCAATGCTAAGGCTACCATGTTATTGCTGTGCTCATGGGTGCAAGAACAACATTAATCATCCAAGAGCCAAGCCATTGAAGGACTTTAGAACTCTTCAAACCCATTACAAAAGGAAGCATGGGTCTAAGCCATTTATGTGTAGAAAATGTGGCAAAACTTTGGCTGTCAAAGGAGATTGGCGAACCCATGAAAAGAATTGTGGGAAGCTTTGGTATTGCAGCTGTGGCTCAGATTTCAAACATAAAAGATCTCTTAAAGATCATATTAGATCCTTTGGAAAAGGCCATCACCCTACCTGCCCTCTTGATGGGTTTGAAGATGACAAAGAATGCCTCACTGGGTCTGATCAAGAACATGAGTTTGCTACTCATTATTAG 924 42.86 MGLRNHMAQENHITFIEWLKPSISLSSSLSSSSSSSSDRDLISPTTAQRCLPLFTEKDEERGRIRDRERKSLGIKEEDEDLVKVEVGLHIGLPNVGDVPNFGDGNMNGFVKKEEMQKSFSNFSTQGRFWIPTPAQILVGPMQFACSICHKSFNRYNNMQMHMWGHGSEYRKGPESLRGSQPAAMLRLPCYCCAHGCKNNINHPRAKPLKDFRTLQTHYKRKHGSKPFMCRKCGKTLAVKGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIRSFGKGHHPTCPLDGFEDDKECLTGSDQEHEFATHY 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 2709643 2711805 - CmaCh13G002920.1 Cma13g00292 306119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00292 307 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 47 302 - -
Cma13g00292 307 SMART c2h2final6 190 222 IPR013087 -
Cma13g00292 307 SMART c2h2final6 227 247 IPR013087 -
Cma13g00292 307 SMART c2h2final6 143 165 IPR013087 -
Cma13g00292 307 PANTHER ZINC FINGER PROTEIN WIP2 47 302 IPR043584 GO:0003700|GO:0010468
Cma13g00292 307 Gene3D Classic Zinc Finger 185 276 - -
Cma13g00292 307 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Cma13g00292 307 Gene3D Classic Zinc Finger 140 165 - -
Cma13g00292 307 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Cma13g00292 307 SUPERFAMILY beta-beta-alpha zinc fingers 212 247 IPR036236 -
Cma13g00292 307 SUPERFAMILY beta-beta-alpha zinc fingers 134 166 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00292 Cma-Chr13:2709643 Cma20g00075 Cma-Chr20:330635 7.50E-102 dispersed
Cma13g00292 Cma-Chr13:2709643 Cma03g00093 Cma-Chr3:930592 1.68E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36077 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00292 - - bhj:120082596 480.715