Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00314 ATGGCGAATCTCTCGTCTTTCATAAATCCAGAAGGGTCAAGCTTTGATTTTGAAGAGCTCGAAGAAGCCATAGTTTTACAGAGAGTTGAGCTTCAAAACGACGAACTAAAATTTCCACAGCCATCGTCAAACCAGAATCAATCACAGAGAAAAGGAGCAAATTCAACGTCACAGAGGCAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGTAGCTGCAAAAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTTCAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCACACAGCACGTTCTGAGGGATTGTTTCTAGGTGCTTGTGGTGGCGTTATGGGTGGCAATATCAGCTCCGGAGCTGCAATATTTAACATGAAGTATGCGCGGTGGCTAGACGACGACCTCCGTATGATGTCAGAATTACGGGCGGCAGTGGAGGGGCATCTCTCGGACGGCGATCTCCGAGCAATCGTAGACGGTTACATGAGTCACTACGATGAAATATTTGAGTTGAAAAGTGTGGGAGCAAAATCAGATGTGTTTCATTTGATGACGGGAATGTGGATGAGTCCGGCGGAGCGTTGCTTCCTTTGGATCGGAGGATTCCGGCCGTCGAAGCTCATAGAGATGGTAATTCCGCAGTTAGAGACATTAACGGAGCAGCAAGCTGTAGGAATATGTAATTTGCAGAGATGTTCACAAGAAACAGAGGATGCTCTGTATCAGGGGCTTGACCAGTTCCACCATTCTCTCATAATCACGGTCGCCGGCACCGCCGTGATGGAGGGGGTCAACCACATGGCCGTGGCCGCCAGGAAGCTCTCCAACCTTGAAGGCTTCATTCGTCAGGCTGACATGTTGAGACAACAAACGCTTCATCAGTTACGTAGAATATTGACGGTTCGACAGACAGCTCGATGTTTCATGATAATTGGAGAGTACTATGGAAGACTCAGAGCTCTTAGTTCATTGTGGGTTTTCCCACCAAGGGCAAGGGAGAGCAGGAGATGGTTGAATGATGAAGGCTCATGCCAAACAGCAACAAGAAGAACAGAGGAAGAGATGATTCAGATTCAGAGTTCCCACAGCCATTTCCCAAACTTCTGA 1134 47.62 MANLSSFINPEGSSFDFEELEEAIVLQRVELQNDELKFPQPSSNQNQSQRKGANSTSQRQLDAKTLRRLAQNRVAAKKSRLRKKAYIQQLEFSRIKLSQLEQDLHTARSEGLFLGACGGVMGGNISSGAAIFNMKYARWLDDDLRMMSELRAAVEGHLSDGDLRAIVDGYMSHYDEIFELKSVGAKSDVFHLMTGMWMSPAERCFLWIGGFRPSKLIEMVIPQLETLTEQQAVGICNLQRCSQETEDALYQGLDQFHHSLIITVAGTAVMEGVNHMAVAARKLSNLEGFIRQADMLRQQTLHQLRRILTVRQTARCFMIIGEYYGRLRALSSLWVFPPRARESRRWLNDEGSCQTATRRTEEEMIQIQSSHSHFPNF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3592187 3595431 + CmaCh13G003140.1 Cma13g00314 306141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00314 377 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 62 104 IPR004827 GO:0003700|GO:0006355
Cma13g00314 377 Pfam bZIP transcription factor 63 102 IPR004827 GO:0003700|GO:0006355
Cma13g00314 377 SUPERFAMILY Leucine zipper domain 66 105 IPR046347 GO:0003700|GO:0006355
Cma13g00314 377 Pfam Seed dormancy control 147 221 IPR025422 GO:0006351|GO:0043565
Cma13g00314 377 ProSiteProfiles DOG1 domain profile. 129 337 IPR025422 GO:0006351|GO:0043565
Cma13g00314 377 PANTHER TRANSCRIPTION FACTOR TGA9 39 346 - -
Cma13g00314 377 MobiDBLite consensus disorder prediction 37 62 - -
Cma13g00314 377 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 67 82 IPR004827 GO:0003700|GO:0006355
Cma13g00314 377 Gene3D - 63 112 - -
Cma13g00314 377 Coils Coil 83 110 - -
Cma13g00314 377 SMART brlzneu 60 126 IPR004827 GO:0003700|GO:0006355
Cma13g00314 377 PANTHER TRANSCRIPTION FACTOR TGA9 39 346 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00314 Cma-Chr13:3592187 Cma20g00170 Cma-Chr20:819556 2.15E-119 dispersed
Cma13g00314 Cma-Chr13:3592187 Cma18g00660 Cma-Chr18:6016786 1.30E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36078 PF14144 DOG1 1.40E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00314 K14431 - csv:101204604 538.495