Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma13g00321 | ATGGCCTCAAAAACGGCTTCCAAACCTTCTGCAACTGATCCAGTTATCTGTGGAGATGTATTGAACTCCACGCAGAAATCCTTGAATCAGTGCACTTTGAGTGATTCATCAAACACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTACAGCAGAGGACTCTGTGGAACCTGAAAAGAAAACATCAGAATGTGAGAGTGGGAAGGATACGAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATAAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGCAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATTGTATACCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAGGACGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACATTGGTTAAGGGATCGTGTTCGGAGTCCGAGGCGCTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTATTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACAGAGGCAAGGTCAATGTCGTTCGTTGGTACGCACGAGTACTTGGCGCCTGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTCGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCGACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTTCCTGAATCACCAGTTGTTAGTTTTGCTGCAAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCACACCAACACCTTCAGTCAGTGGAAAAACTGTAATGGCTAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG | 1647 | 47.3 | MASKTASKPSATDPVICGDVLNSTQKSLNQCTLSDSSNTKEITLTQRDPALTGTRGTAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPTPTPSVSGKTVMARPGPDSKSSDNYLEFDFF | 548 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
13 | 3713637 | 3715370 | - | CmaCh13G003210.1 | Cma13g00321 | 306148 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma13g00321 | 548 | MobiDBLite | consensus disorder prediction | 102 | 129 | - | - | |
Cma13g00321 | 548 | MobiDBLite | consensus disorder prediction | 517 | 540 | - | - | |
Cma13g00321 | 548 | PANTHER | FLIPPASE KINASE 1-RELATED | 27 | 548 | - | - | |
Cma13g00321 | 548 | CDD | STKc_phototropin_like | 153 | 514 | - | - | |
Cma13g00321 | 548 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 27 | 548 | - | - | |
Cma13g00321 | 548 | SMART | serkin_6 | 154 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00321 | 548 | MobiDBLite | consensus disorder prediction | 29 | 86 | - | - | |
Cma13g00321 | 548 | Pfam | Protein kinase domain | 155 | 307 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00321 | 548 | Pfam | Protein kinase domain | 388 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00321 | 548 | SUPERFAMILY | Protein kinase-like (PK-like) | 126 | 526 | IPR011009 | - | |
Cma13g00321 | 548 | MobiDBLite | consensus disorder prediction | 59 | 73 | - | - | |
Cma13g00321 | 548 | ProSiteProfiles | Protein kinase domain profile. | 154 | 491 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma13g00321 | 548 | MobiDBLite | consensus disorder prediction | 29 | 52 | - | - | |
Cma13g00321 | 548 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 275 | 287 | IPR008271 | GO:0004672|GO:0006468 | |
Cma13g00321 | 548 | Gene3D | Transferase(Phosphotransferase) domain 1 | 240 | 508 | - | - | |
Cma13g00321 | 548 | Gene3D | Phosphorylase Kinase; domain 1 | 148 | 239 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma03g00597 | Cma-Chr3:5305588 | Cma13g00321 | Cma-Chr13:3713637 | 0 | dispersed | |
Cma07g00363 | Cma-Chr7:1552404 | Cma13g00321 | Cma-Chr13:3713637 | 0 | dispersed | |
Cma13g00321 | Cma-Chr13:3713637 | Cma14g00672 | Cma-Chr14:3423555 | 0 | dispersed | |
Cma18g00495 | Cma-Chr18:2891742 | Cma13g00321 | Cma-Chr13:3713637 | 1.40E-134 | dispersed | |
Cma13g00321 | Cma-Chr13:3713637 | Cma18g00622 | Cma-Chr18:5507489 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68995 | PF00069 | Pkinase | 7.00E-37 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma13g00321 | K08286 | - | csv:101213662 | 943.725 |