Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00321 ATGGCCTCAAAAACGGCTTCCAAACCTTCTGCAACTGATCCAGTTATCTGTGGAGATGTATTGAACTCCACGCAGAAATCCTTGAATCAGTGCACTTTGAGTGATTCATCAAACACCAAAGAGATCACATTGACCCAGCGAGATCCTGCGCTTACCGGGACTCGGGGTACAGCAGAGGACTCTGTGGAACCTGAAAAGAAAACATCAGAATGTGAGAGTGGGAAGGATACGAACAGTGTTGCTAAGAGCAGTGGAAGTGGTAAGATTAGTAACTGTGTGGAGATGGTTGAGAGTGGGAAGAGCAGCGTGTGTCGGGGTAGCACGAGCAGCGATATAAGCGATGAAAGCAGCTGTAGCAGCTTTAGTAGTAGCATCAGTAAGCCTCACAAGTCGAATGACTTGAGATGGGAGGCCATCCAAGCTGTCCGTGCAAGGGATGGGATTTTGGGATTAGGCCATTTTAGACTGTTGAAGAGACTAGGTTGTGGCGATATCGGAAGCGTCTACTTGTCGGAGTTGAGCGGTACTAAATGTTACTTTGCAATGAAGGTCATGGATAAAGGGTCTCTAGCGAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAACGAGAAATACTGCAATCTCTTGATCATCCATTCCTGCCTACATTGTATACTCATTTCGAAACTGACAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTGCACACTCTAAGGCAGAGACAGCCCGGGAAGCATTTTCCCGAACAGGCCGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTTGAGTATCTTCACATGCTCGGGATTGTATACCGGGACCTTAAGCCCGAGAATGTTCTCGTGAGGGAGGACGGACACATAATGCTTTCAGATTTTGATCTTTCCTTAAGATGTGCTGTTAGTCCAACATTGGTTAAGGGATCGTGTTCGGAGTCCGAGGCGCTGAGAAAGAATTCAGTTTATTGTGCTCAACCGGCTTGTATCCAACCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACCATGTGCTTCTCTCCCAGGCTATTCTCTAGCAAGTCAAAGAAGGATAGGAAACCCAAGATTGAAATAGGAAACCAGGTAACGCCATTGCCAGAGCTCGTTGCAGAGCCTACAGAGGCAAGGTCAATGTCGTTCGTTGGTACGCACGAGTACTTGGCGCCTGAGATCATTAAAGGTGAAGGTCATGGAAGTGCTGTTGACTGGTGGACATTCGGGATCTTTCTATATGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCGACGTTGTTCAACGTCGTCGGTCAGCCTTTACGGTTTCCTGAATCACCAGTTGTTAGTTTTGCTGCAAGAGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGAGCAACTGAGATCAAACAACACCCCTTCTTTGAAGGTGTTAACTGGGCATTGATACGATGCGCTTCGCCACCGGAAGTACCAAAGCCTGTCGAGATCGAGCGGATACCCACACCAACACCTTCAGTCAGTGGAAAAACTGTAATGGCTAGACCTGGCCCTGACTCCAAATCATCTGATAATTATCTGGAGTTTGATTTCTTTTAG 1647 47.3 MASKTASKPSATDPVICGDVLNSTQKSLNQCTLSDSSNTKEITLTQRDPALTGTRGTAEDSVEPEKKTSECESGKDTNSVAKSSGSGKISNCVEMVESGKSSVCRGSTSSDISDESSCSSFSSSISKPHKSNDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEALRKNSVYCAQPACIQPSCIQPSCVVPTMCFSPRLFSSKSKKDRKPKIEIGNQVTPLPELVAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPTPTPSVSGKTVMARPGPDSKSSDNYLEFDFF 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3713637 3715370 - CmaCh13G003210.1 Cma13g00321 306148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00321 548 MobiDBLite consensus disorder prediction 102 129 - -
Cma13g00321 548 MobiDBLite consensus disorder prediction 517 540 - -
Cma13g00321 548 PANTHER FLIPPASE KINASE 1-RELATED 27 548 - -
Cma13g00321 548 CDD STKc_phototropin_like 153 514 - -
Cma13g00321 548 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 27 548 - -
Cma13g00321 548 SMART serkin_6 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00321 548 MobiDBLite consensus disorder prediction 29 86 - -
Cma13g00321 548 Pfam Protein kinase domain 155 307 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00321 548 Pfam Protein kinase domain 388 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00321 548 SUPERFAMILY Protein kinase-like (PK-like) 126 526 IPR011009 -
Cma13g00321 548 MobiDBLite consensus disorder prediction 59 73 - -
Cma13g00321 548 ProSiteProfiles Protein kinase domain profile. 154 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma13g00321 548 MobiDBLite consensus disorder prediction 29 52 - -
Cma13g00321 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Cma13g00321 548 Gene3D Transferase(Phosphotransferase) domain 1 240 508 - -
Cma13g00321 548 Gene3D Phosphorylase Kinase; domain 1 148 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00597 Cma-Chr3:5305588 Cma13g00321 Cma-Chr13:3713637 0 dispersed
Cma07g00363 Cma-Chr7:1552404 Cma13g00321 Cma-Chr13:3713637 0 dispersed
Cma13g00321 Cma-Chr13:3713637 Cma14g00672 Cma-Chr14:3423555 0 dispersed
Cma18g00495 Cma-Chr18:2891742 Cma13g00321 Cma-Chr13:3713637 1.40E-134 dispersed
Cma13g00321 Cma-Chr13:3713637 Cma18g00622 Cma-Chr18:5507489 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68995 PF00069 Pkinase 7.00E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00321 K08286 - csv:101213662 943.725