Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma13g00330 ATGAACTTTCCCACTTTTGTTCTTATTTTGTTCGGGTTCTTTTGGTTAATATCACCTGCAATCGCTATCAAAAAGTCGTATATTGTGTTATTAGGATCTCATGCTCATGGTTTAGAAGTTTCAGCTGAAGATCTTCAAAGAGTCGTCGATTCCCATCACAAATTGCTTGGATCCTTCTTGGGGAGTTTTGAGAAGGCAAAAGATGCAATTTTTTACTCGTATAAGAACCATATAAATGGGTTTGCAGCCATTCTCGATGAGGAGGAGGCCACCAAGCTTGCAAAGCACCCAGAAGTAGTAGCAGTGTTGCCAAACAAAGCGAAAGAATTACACACAACTCGTTCATGGGAGTTCATGCATTTGGAGAAGAATGGTGTTAGTCCCCCTTCTTCTCCTTGGAGGAAGGCTAGATCAGGACGAAGTGTTATTATCGCCAATCTCGACACTGTTGGAGGTGTGCCATCGAGGTGGAAAGGAGGTTGCATGGATAAAGCCCCTGATGCAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTATTTCAATCAGGGGGTAATCGCGTACTTGAAATCTGAAAATTTAACGGACGAACTCTCATTCATCGTCAACTCCACGCGCGACTACGAAGGTCATGGATCCCACACGTTGTCGACGGCCGGTGGCAGCTATGTCTCCGGCGTCAGCGTATTTGGGTCCGGTATTGGAACTGCCAAGGGCGGCTCTCCCAAGGCTCGTGTCGCTGCCTATAAGGTGTGCTGGCCGCTCCACGATATTGGAGGCTGCTTCGACGCCGACATTGCCAAGGCATTTGATCATGCCATCCATGATGGCGTCGACGTCCTTTCGCTTTCCCTTGGCAGTCCACCTGCTGAATACTATGATGATATCATCGCTATTGCTTCCTTTCATGCACTGAAGAAAGGAATCCCTGTTGTGTGCTCTGCTGGCAACGATGGCCCGAACATGGCTACTGCTTCTAATACTGCTCCGTGGATTTTGACTGTCGGAGCTAGCACTTTGGACCGTGAATTTCAGGCTCCCATTGAACTTAGAAATGGGAAACACTTCAAGGGGTCGAGCCTTTCGGGACCATTATCGGGAAGAAAGCTATACCCATTGATAACCGGAGCTCAGGCAAAAGCGACGACCGCCTCTGCTAACGACGCCATGCTCTGCAAGCCGGAAACTTTGGATCATTCTAAAGTGAAAGGGAAGATCTTGGTTTGCTTGAGAGGGGATTCTTCGAGAGTTGACAAAGGAGTGCAAGCCCTCCTCGCTGGTGCTGTTGGAATGATTCTCTGCAACGATAAGCTTAGTGGATTTGAGATCATCGCCGATCCCCATGTTCTTCCAGCTTCCCATATCAGTTACAACGACGGCCAAACTGTTTCCTCGTACATCAATTCCACGAAAAATCCGATGGGGCATTTGATCCCGCCATTGTCTAAAGTTAATACCAAACCTTCTCCGACAATGGCGGCTTTCTCATCCAGAGGACCCAACATGGTTTCACCGGAAATTATCAAGCCGGATGTGACAGCGCCAGGAGTGAACATAATTGCAGCATTCTCCGGCGCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAACAGTTCCATACATAACAATGTCAGGGACCTCCATGTCCTGTCCCCATGTCTCTGGCATTGTCGGCCTCCTTAAAGCTCTCCACCCGAAATGGAGCCCCGCCGCCATTAAATCTGCCATAATGACCTCTGCCAGAACTCGTGACAACACAATGAACCTCATGCTCGACGGCGGCTCCCCTATCTTCGCTCCAGCCACCCCCTTCATATTTGGGTCAGGGCACATCCGCCCCACTGGAGCCATTGACCCCGGCCTTGTCTACGACCTTTCCCCCAACGATTACTTGGAATTCCTCTGTGCCAGCGGCTACAAGGAGAAGAACCTTCGAGTATTCGCCGATGGCAATTTCAAATGCCCTATTTCTAGTTCTGTTTTGAACTTTAATTACCCTTCAATTGGGGTTCAGAACTTGACGGGCAGTGTCACCCTTACTAGAAGGTTGAAGAATGTTGGCAGGCCGGGGGTTTACAGAGTCAAGGTTCGACAGCCGAAAGGAGTTAAGGTTTCGGTGAAGCCAAGCATTTTGAAGTTTGGGAAGATTGGAGAGGAGAAGAGGTTTGAATTGACGATGACTAGAGCAATGGCGAATAGTCAAATTGTTTACGGCACGTTGATTTGGACCGATGGCAAACACTTTGTTAGGAGTCCAATTGTGGTTTCTTCCGGCTTTTTCTAA 2286 48.56 MNFPTFVLILFGFFWLISPAIAIKKSYIVLLGSHAHGLEVSAEDLQRVVDSHHKLLGSFLGSFEKAKDAIFYSYKNHINGFAAILDEEEATKLAKHPEVVAVLPNKAKELHTTRSWEFMHLEKNGVSPPSSPWRKARSGRSVIIANLDTVGGVPSRWKGGCMDKAPDAVPCNRKLIGAKYFNQGVIAYLKSENLTDELSFIVNSTRDYEGHGSHTLSTAGGSYVSGVSVFGSGIGTAKGGSPKARVAAYKVCWPLHDIGGCFDADIAKAFDHAIHDGVDVLSLSLGSPPAEYYDDIIAIASFHALKKGIPVVCSAGNDGPNMATASNTAPWILTVGASTLDREFQAPIELRNGKHFKGSSLSGPLSGRKLYPLITGAQAKATTASANDAMLCKPETLDHSKVKGKILVCLRGDSSRVDKGVQALLAGAVGMILCNDKLSGFEIIADPHVLPASHISYNDGQTVSSYINSTKNPMGHLIPPLSKVNTKPSPTMAAFSSRGPNMVSPEIIKPDVTAPGVNIIAAFSGAVSPTGEPFDNRTVPYITMSGTSMSCPHVSGIVGLLKALHPKWSPAAIKSAIMTSARTRDNTMNLMLDGGSPIFAPATPFIFGSGHIRPTGAIDPGLVYDLSPNDYLEFLCASGYKEKNLRVFADGNFKCPISSSVLNFNYPSIGVQNLTGSVTLTRRLKNVGRPGVYRVKVRQPKGVKVSVKPSILKFGKIGEEKRFELTMTRAMANSQIVYGTLIWTDGKHFVRSPIVVSSGFF 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
13 3831915 3835146 + CmaCh13G003300.1 Cma13g00330 306157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma13g00330 761 Gene3D - 341 485 - -
Cma13g00330 761 PANTHER PEPTIDASE S8 17 758 - -
Cma13g00330 761 PANTHER BNAC02G33520D PROTEIN 17 758 - -
Cma13g00330 761 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 111 IPR037045 -
Cma13g00330 761 PRINTS Subtilisin serine protease family (S8) signature 545 561 IPR015500 -
Cma13g00330 761 PRINTS Subtilisin serine protease family (S8) signature 207 220 IPR015500 -
Cma13g00330 761 Gene3D - 635 759 - -
Cma13g00330 761 ProSiteProfiles Serine proteases, subtilase domain profile. 115 618 - -
Cma13g00330 761 Pfam Fibronectin type-III domain 663 756 IPR041469 -
Cma13g00330 761 Gene3D Peptidase S8/S53 domain 149 631 IPR036852 GO:0004252|GO:0006508
Cma13g00330 761 Pfam Peptidase inhibitor I9 26 110 IPR010259 -
Cma13g00330 761 SUPERFAMILY Subtilisin-like 110 622 IPR036852 GO:0004252|GO:0006508
Cma13g00330 761 CDD Peptidases_S8_3 108 581 IPR034197 -
Cma13g00330 761 SUPERFAMILY Protease propeptides/inhibitors 25 105 - -
Cma13g00330 761 SUPERFAMILY PA domain 399 470 IPR046450 -
Cma13g00330 761 CDD PA_subtilisin_like 348 475 - -
Cma13g00330 761 Pfam PA domain 388 462 IPR003137 -
Cma13g00330 761 ProSitePatterns Serine proteases, subtilase family, serine active site. 546 556 IPR023828 -
Cma13g00330 761 Pfam Subtilase family 203 587 IPR000209 GO:0006508|GO:0008236
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00330 Cma-Chr13:3831915 Cma13g00333 Cma-Chr13:3857810 0 dispersed
Cma13g00339 Cma-Chr13:3920324 Cma13g00330 Cma-Chr13:3831915 0 dispersed
Cma13g00340 Cma-Chr13:3948503 Cma13g00330 Cma-Chr13:3831915 1.24E-47 dispersed
Cma13g00330 Cma-Chr13:3831915 Cma13g00331 Cma-Chr13:3848857 4.53E-62 tandem
Cma13g00330 Cma-Chr13:3831915 Cma16g00976 Cma-Chr16:7523164 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma13g00330 - - cmos:111434037 1290.4