Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma13g00333 | ATGAACTTTACTAATTTCATCCTTATTTTATTCTGGTTTTTTCGGTTAATATCACCTGTCATTGCTGTAAAGAAGTCCTATATTGTGTTATTAGGATCTCACTCACATGGGTTAGAGGTATCAACAATAGATCTTCAAAGAGTGGTTGATTCCCATCACAAATTGCTCGGATCCTTCTTGGGGAGTTCTGAAAAGGCAAAAGATGCCATTTTTTACTCGTATAAGAACCATATAAATGGGTTTGCAGCCATTCTAGATGAGGAAGAGGCCACCAAGTTTGCAAAGCACCCAGAAGTAGCAGCAGTGTTGCCAAACAAAGCCAAAGAGTTGCACACAACTCATTCATGGGAGTTCATGCATTTGGAGAAGAATGGTTTTATTCTCCCTTTTTCTCCTTGGAGGAAGGCTAGATTTGGAAAAGATGTTATTATTGCCAATCTCGACACCGGTGTATGGCCCGAGTCCAAGAGTTTTGGAGAACAGGGCATAGTAGGAGGTGTGCCATCGAGATGGAAAGGAGGTTGCACGGATAAAACTCCTGATGCAGTGCCTTGTAACAGGAAATTAATCGGAGCAAAGTATTTCAATCAGGGGGTAATCGCGTACTTGAAATCCCAAAATTTAACAGATGAACTCCCATTGATCGTCAACTCCACGCGCGATTACGTAGGTCATGGATCCCACACGCTATCGACAGCCGGCGGAAACTATGTCTCTGGCGTCAGCGTATTTGGGTCCGGTATCGGAACTGCCAAGGGCGGCTCTCCCAAGGCCCGCGTCGCTGCCTATAAGGTATGCTGGCCGTTCCACAACAGTGGCGGTTGCTACGACGCCGACATTTTTGACGGAATTGATCAAGCCATCTACGACGGCGTCGATGTCCTTTCGCTTTCCATCGGCAGTCCACCAGCCGAATACTATGATGATACCATCGCCATTGCTTCCTTTCATGCACTGAAGAAAGGAATCCCCGTGGTGTGCTCTGCCGGCAACTCTGGCCCGAGCATGGCGACTGCTACTAATATTGCTCCGTGGATTTTGACGGTTGGGGCTAGCACTTTGGACCGGAGAAAGCTATACCCATTGATAACTGGAGCTCAGGCGAAAGCAACGACCGCCTCTGCCGACGACGCCATGCTCTGCAAGCCGAAAACTTTGGATCGTTCTAAAGTGAATGGGAAGATCTTGGTTTGCTTGACAGGGGGCTCTTCGAGAATTGACAAAGGAATGCAAGCCGTCCTCGCAGGTGCTGTTGGAATGATTCTCTGCAACGATAGGTTTAGTGGATTTAAAATCATCGCCGATCTCCATGTTCTTCCAGCTTCTCATATCAGTTACAATGACGGTCAAGCTGTTTCCTCGTACATCAATTCTAGGAAAAATCCAATGGGATATTTGATCCCACCGTCGTCCAAAGTTAATACCAAACCTTCTCCGATCATGGCGGCTTTCTCATCCAGAGGACCCAACATGATTTCTCCGGAAATTATCAAGCCGGATGTGACAGCGCCGGGAGTGAACATAATCGCGGCATTCTCTGGCGCCGTGAGCCCAACAGGGGAGCCATTCGACAACAGAACAGTTCCATACATAACAATGTCAGGGACTTCCATGTCCTGTCCCCATGTCTCCGGCATTGTCGGCCTCCTCAAAGCTCTCCACCCCGAATGGAGCCCCGCCGCCATCAAATCCGCCATAATGACCTCCGCCACAATTAGCGACAACACAATGAACCTCATGCTCGACGGCGGCTCCCCTATCTTCGCTCCAGCCACCCCCTTCATATATGGGTCAGGGCACATCCACCCCACTGGCGCCATCGACCCCGGCCTCGTCTACGACCTCTCCCCCAACGATTACTTAGAATTCCTCTGCGCCAGCGGCTACAAGGAGAAGAACATTCGAGTATTCGCCGATGAAAATTTCAAGTGCCCTGTTTCTGGTTCTATTTTAAACTTTAATTACCCTTCCATTGGGGTTCAGAACTTGACTGGGAGTGTCACCGTTACTAGAAGGTTGAAGAATGTTGGCAGGCCGGGGGTTTATAGAGTCAGAGTTCGACGGCCAGAAGGAGTTAAGGTTTCAGTGAAGCCAAGAGTTCTGAAGTTTTGGAAGATTGGAGAGGAGAAGAGGTTTGAATTGACGATGACCGGAGCTGTGGCGGAGGGTCAAATTGGTTATGGTACGCTAATTTGGACCGACGGCAAGCACTTTGTTAAGAGTCCAATTGTGGTTTCTTCTGGCTTTTTCTGA | 2253 | 48.51 | MNFTNFILILFWFFRLISPVIAVKKSYIVLLGSHSHGLEVSTIDLQRVVDSHHKLLGSFLGSSEKAKDAIFYSYKNHINGFAAILDEEEATKFAKHPEVAAVLPNKAKELHTTHSWEFMHLEKNGFILPFSPWRKARFGKDVIIANLDTGVWPESKSFGEQGIVGGVPSRWKGGCTDKTPDAVPCNRKLIGAKYFNQGVIAYLKSQNLTDELPLIVNSTRDYVGHGSHTLSTAGGNYVSGVSVFGSGIGTAKGGSPKARVAAYKVCWPFHNSGGCYDADIFDGIDQAIYDGVDVLSLSIGSPPAEYYDDTIAIASFHALKKGIPVVCSAGNSGPSMATATNIAPWILTVGASTLDRRKLYPLITGAQAKATTASADDAMLCKPKTLDRSKVNGKILVCLTGGSSRIDKGMQAVLAGAVGMILCNDRFSGFKIIADLHVLPASHISYNDGQAVSSYINSRKNPMGYLIPPSSKVNTKPSPIMAAFSSRGPNMISPEIIKPDVTAPGVNIIAAFSGAVSPTGEPFDNRTVPYITMSGTSMSCPHVSGIVGLLKALHPEWSPAAIKSAIMTSATISDNTMNLMLDGGSPIFAPATPFIYGSGHIHPTGAIDPGLVYDLSPNDYLEFLCASGYKEKNIRVFADENFKCPVSGSILNFNYPSIGVQNLTGSVTVTRRLKNVGRPGVYRVRVRRPEGVKVSVKPRVLKFWKIGEEKRFELTMTGAVAEGQIGYGTLIWTDGKHFVKSPIVVSSGFF | 750 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 13 | 3857810 | 3861038 | + | CmaCh13G003330.1 | Cma13g00333 | 306160 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma13g00333 | 750 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 21 | 111 | IPR037045 | - | |
| Cma13g00333 | 750 | PANTHER | BNAC02G33520D PROTEIN | 396 | 747 | - | - | |
| Cma13g00333 | 750 | Pfam | Subtilase family | 139 | 576 | IPR000209 | GO:0006508|GO:0008236 | |
| Cma13g00333 | 750 | PANTHER | PEPTIDASE S8 | 396 | 747 | - | - | |
| Cma13g00333 | 750 | PANTHER | BNAC02G33520D PROTEIN | 16 | 356 | - | - | |
| Cma13g00333 | 750 | SUPERFAMILY | PA domain | 389 | 459 | IPR046450 | - | |
| Cma13g00333 | 750 | CDD | PA_subtilisin_like | 349 | 466 | - | - | |
| Cma13g00333 | 750 | Gene3D | - | 355 | 474 | - | - | |
| Cma13g00333 | 750 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 115 | 607 | - | - | |
| Cma13g00333 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 139 | 158 | IPR015500 | - | |
| Cma13g00333 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 221 | 234 | IPR015500 | - | |
| Cma13g00333 | 750 | PRINTS | Subtilisin serine protease family (S8) signature | 534 | 550 | IPR015500 | - | |
| Cma13g00333 | 750 | CDD | Peptidases_S8_3 | 108 | 571 | IPR034197 | - | |
| Cma13g00333 | 750 | Gene3D | - | 624 | 748 | - | - | |
| Cma13g00333 | 750 | Pfam | PA domain | 377 | 451 | IPR003137 | - | |
| Cma13g00333 | 750 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 535 | 545 | IPR023828 | - | |
| Cma13g00333 | 750 | SUPERFAMILY | Subtilisin-like | 110 | 611 | IPR036852 | GO:0004252|GO:0006508 | |
| Cma13g00333 | 750 | Pfam | Peptidase inhibitor I9 | 26 | 110 | IPR010259 | - | |
| Cma13g00333 | 750 | Pfam | Fibronectin type-III domain | 652 | 745 | IPR041469 | - | |
| Cma13g00333 | 750 | Gene3D | Peptidase S8/S53 domain | 141 | 620 | IPR036852 | GO:0004252|GO:0006508 | |
| Cma13g00333 | 750 | PANTHER | PEPTIDASE S8 | 16 | 356 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma13g00330 | Cma-Chr13:3831915 | Cma13g00333 | Cma-Chr13:3857810 | 0 | dispersed | |
| Cma13g00331 | Cma-Chr13:3848857 | Cma13g00333 | Cma-Chr13:3857810 | 1.29E-62 | dispersed | |
| Cma13g00333 | Cma-Chr13:3857810 | Cma13g00339 | Cma-Chr13:3920324 | 0 | dispersed | |
| Cma13g00335 | Cma-Chr13:3874425 | Cma13g00333 | Cma-Chr13:3857810 | 2.55E-96 | dispersed | |
| Cma13g00333 | Cma-Chr13:3857810 | Cma13g00340 | Cma-Chr13:3948503 | 9.93E-58 | proximal | |
| Cma13g00332 | Cma-Chr13:3854474 | Cma13g00333 | Cma-Chr13:3857810 | 8.89E-11 | tandem | |
| Cma13g00333 | Cma-Chr13:3857810 | Cma13g00334 | Cma-Chr13:3872461 | 0 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma13g00333 | - | - | cmax:111471617 | 1385.93 |